CATH Domain: 1m48B00 XML data for domain: 1m48B00

Molscript image for 1m48B00
1m48B00
PDB coordinates for domain 1m48B00

PDB 1m48, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.1250 Growth Hormone; Chain: A;
1.20.1250.10 Gene3D
1.20.1250.10.5
1.20.1250.10.5.1
1.20.1250.10.5.1.1
1.20.1250.10.5.1.1.1
1.20.1250.10.5.1.1.1.1

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Segment boundaries for domain 1m48B00

Chopping figure for domain 1m48B00
DomainStart PDB ResidueStop PDB Residue
1m48B00 4 133

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 1.20.1250.10.5.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3l5xA00 81.55 Cellular component movementCytokine activitySoluble fractionHomo sapiensInterleukin-13 1.20.1250.10 101 9 75 2.78 3.69
2gmfA00 80.96 Jak-STAT signaling pathwayPositive regulation of DNA replicationPositive regulation of tyrosine phosphorylation of Stat5 proteinHematopoietic cell lineageNegative regulation of cytolysis 1.20.1250.10 121 7 77 3.51 4.51
1wr6A00 75.29 ADP-ribosylation factor-binding protein GGA3ADP-ribosylation factor bindingHomo sapiensTrans-Golgi network 1.20.58.160 88 5 38 1.63 4.19
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1m48B00
SSSTKKTQLQLEHLLLDLQMILNGINNYKNPKLTRMLTFKFYMPKKATELKHLQCLEEELKPLEEVLNLAQSKNFRDLIS
NINVIVLELKGSETTFMCEYADETATIVEFLNRWITFCQSIISTLT
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1m48B00
APTSSSTKKTQLQLEHLLLDLQMILNGINNYKNPKLTRMLTFKFYMPKKATELKHLQCLEEELKPLEEVLNLAQSKNFHL
RPRDLISNINVIVLELKGSETTFMCEYADETATIVEFLNRWITFCQSIISTLT
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:20

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:20

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:42

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"