CATH Domain: 1m3kA02 XML data for domain: 1m3kA02

Molscript image for 1m3kA02
1m3kA02
PDB coordinates for domain 1m3kA02

PDB 1m3k, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.47 Peroxisomal Thiolase; Chain A, domain 1
3.40.47.10 Gene3D
3.40.47.10.7
3.40.47.10.7.1
3.40.47.10.7.1.1
3.40.47.10.7.1.1.1
3.40.47.10.7.1.1.1.5

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Segment boundaries for domain 1m3kA02

Chopping figure for domain 1m3kA02
DomainStart PDB ResidueStop PDB Residue
1m3kA01 4 124
1m3kA01 194 275
1m3kA02 152 193
1m3kA02 276 389

Structural Neighbourhood (2 entries)

There are 2 matching structural neighberhood comparisons for CATH ID 3.40.47.10.7.1.1.1.5 (SIMAX score < 5)

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Displaying entries 1 to 2 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1tqyB02 80.63 Actinorhodin polyketide putative beta-ketoacyl synthase 2Biosynthesis of type II polyketide backboneStreptomyces coelicolor3-oxoacyl-ACP synthase II [EC:2.3.1.-] 3.40.47.10 148 16 71 2.99 4.20
2vbaC02 77.51 Fatty acid biosynthesisMetabolic pathways3-oxoacyl-[acyl-carrier-protein] synthase 13-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]Fatty acid biosynthetic process 3.40.47.10 147 10 69 2.90 4.15
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Displaying entries 1 to 2 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1m3kA02
FYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLV
EANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMCI
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1m3kA02
FYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLV
EANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMCI
BLAST against CATH

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Domain History Events (4)

Classification merge by cuff on 16 Jun 2009 15:53

COMMENT: these two domains are homologous. same SCOP superfamily, same function. merge FINAL: merge 3.40.47.20 -> 3.40.47.10

Set cath from cathlist by auto on 05 Mar 2006 19:11

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:11

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:12

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"