CATH Domain: 1m3kA01 XML data for domain: 1m3kA01

Molscript image for 1m3kA01
1m3kA01
PDB coordinates for domain 1m3kA01

PDB 1m3k, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.47 Peroxisomal Thiolase; Chain A, domain 1
3.40.47.10 Gene3D
3.40.47.10.3
3.40.47.10.3.1
3.40.47.10.3.1.1
3.40.47.10.3.1.1.5
3.40.47.10.3.1.1.5.1

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Segment boundaries for domain 1m3kA01

Chopping figure for domain 1m3kA01
DomainStart PDB ResidueStop PDB Residue
1m3kA01 4 124
1m3kA01 194 275
1m3kA02 152 193
1m3kA02 276 389

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 3.40.47.10.3.1.1.5.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1wdkC01 90.14 Pseudomonas fragi3-ketoacyl-CoA thiolase 3.40.47.10 213 40 94 2.20 2.32
1afwA01 89.17 Fatty acid metabolismValine, leucine and isoleucine degradationProtein binding3-ketoacyl-CoA thiolase, peroxisomalMetabolic pathways 3.40.47.10 210 33 93 1.87 1.99
1tqyA02 78.15 3-oxoacyl-ACP synthase I [EC:2.3.1.-]Biosynthesis of type II polyketide backboneStreptomyces coelicolorActinorhodin polyketide putative beta-ketoacyl synthase 1 3.40.47.10 160 9 61 2.79 4.51
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1m3kA01
SIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAW
GMNQLAGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLR
PAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRI
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1m3kA01
SIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAW
GMNQLAGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLR
PAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRI
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:11

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:11

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:12

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"