CATH Domain: 1m2dA00 XML data for domain: 1m2dA00

Molscript image for 1m2dA00
1m2dA00
PDB coordinates for domain 1m2dA00

PDB 1m2d, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.30 Glutaredoxin
3.40.30.10 Glutaredoxin Gene3D
3.40.30.10.10
3.40.30.10.10.1
3.40.30.10.10.1.1
3.40.30.10.10.1.1.1
3.40.30.10.10.1.1.1.1

[top]
Segment boundaries for domain 1m2dA00

Chopping figure for domain 1m2dA00
DomainStart PDB ResidueStop PDB Residue
1m2dA00 3 103

Structural Neighbourhood (24 entries)

There are 24 matching structural neighberhood comparisons for CATH ID 3.40.30.10.10.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 24 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1v98A00 81.17 Thermus thermophilus HB8Thioredoxin 2 [EC:1.8.1.8]Thioredoxin 3.40.30.10 92 9 77 2.49 3.22
1a8lA02 79.76 Pyrococcus furiosusGlutaredoxin-like protein 3.40.30.10 106 9 73 2.90 3.94
1hyuA02 78.62 Salmonella enterica subsp. enterica serovar TyphimuriumAlkyl hydroperoxide reductase subunit F [EC:1.6.4.-]Alkyl hydroperoxide reductase subunit F 3.40.30.10 95 12 69 2.87 4.14
2vimA00 78.32 Fasciola hepaticaThioredoxin (TRX) 3.40.30.10 104 5 71 2.71 3.81
2e0qA00 78.09 Sulfolobus tokodaii140aa long hypothetical thioredoxinThioredoxin 1 3.40.30.10 104 7 74 3.28 4.43
1gh2A00 77.87 CytoplasmHomo sapiensThioredoxin-like protein 1Disulfide oxidoreductase activity 3.40.30.10 107 9 70 2.77 3.95
1w4vA00 77.67 Thioredoxin, mitochondrialHomo sapiensThioredoxin 1 3.40.30.10 110 7 67 2.75 4.09
1egoA00 76.97 Glutaredoxin 1Glutaredoxin-1Protein bindingEscherichia coli K-12 3.40.30.10 85 7 70 3.14 4.47
2pu9C00 76.90 Thioredoxin F-type, chloroplasticSpinacia oleraceaProtein binding 3.40.30.10 111 5 67 2.64 3.91
2khpA00 76.86 Glutaredoxin 3Brucella melitensisGlutaredoxin 3.40.30.10 92 8 72 3.12 4.32
1h75A00 76.70 Glutaredoxin-like protein NrdHGlutaredoxin-like protein nrdHEscherichia coli K-12 3.40.30.10 76 6 64 3.10 4.82
2wb9A01 76.52 Fasciola hepaticaGlutathione transferase sigma class 3.40.30.10 82 4 65 2.93 4.48
2in3A01 75.94 Nitrosomonas europaeaPutative protein-disulfide isomerasePutative uncharacterized protein 3.40.30.10 78 11 72 3.53 4.88
2c3nA01 75.90 Soluble fractionGlutathione S-transferase theta-1Glutathione metabolic processGlutathione transferase activityGlutathione metabolism 3.40.30.10 79 5 62 3.04 4.87
1r26A00 75.75 Trypanosoma brucei bruceiThioredoxin 3.40.30.10 113 4 67 3.02 4.49
1t1vA00 75.68 Mus musculusSH3 domain-binding glutamic acid-rich-like protein 3 3.40.30.10 93 11 74 3.53 4.75
2f51A00 75.53 Trichomonas vaginalisThioredoxin 1Thioredoxin 3.40.30.10 101 1 68 3.09 4.52
1ttzA00 75.43 Xanthomonas campestris pv. campestrisPutative uncharacterized protein 3.40.30.10 74 6 65 2.87 4.39
2dizA00 74.95 Anti-apoptosisHomo sapiensThioredoxin domain-containing protein 5 3.40.30.10 117 5 70 3.50 4.99
1fo5A00 74.82 Methanocaldococcus jannaschiiThioredoxin 3.40.30.10 85 11 74 3.56 4.79
2trcP01 74.32 PhosducinRattus norvegicus 3.40.30.10 131 10 58 2.86 4.93
2av4A00 72.80 SpliceosomeU5 snRNP protein, DIM1 familyPlasmodium yoelii yoeliiDrosophila melanogaster RE13747p 3.40.30.10 135 4 60 2.92 4.81
1iloA00 72.46 Methanothermobacter thermautotrophicus str. Delta HConserved protein 3.40.30.10 77 11 69 3.43 4.95
1sjiA03 71.86 Canis lupus familiarisCalsequestrin-2 3.40.30.10 123 11 65 3.17 4.81
[1]
Displaying entries 1 to 24 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1m2dA00
FKHVFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCMNASMMGPVVVVYPDGVWYGQVKPEDV
DEIVEKHLKGGEPVERLVISK
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1m2dA00
AEFKHVFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCMNASMMGPVVVVYPDGVWYGQVKPE
DVDEIVEKHLKGGEPVERLVISKGKPPGMF
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:10

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:10

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:33

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"