CATH Domain: 1m1nB03 XML data for domain: 1m1nB03

Molscript image for 1m1nB03
1m1nB03
PDB coordinates for domain 1m1nB03

PDB 1m1n, Chain B, Domain 3

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.1980 Nitrogenase molybdenum iron protein domain Gene3D
3.40.50.1980.5
3.40.50.1980.5.1
3.40.50.1980.5.1.1
3.40.50.1980.5.1.1.1
3.40.50.1980.5.1.1.1.1

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Segment boundaries for domain 1m1nB03

Chopping figure for domain 1m1nB03
DomainStart PDB ResidueStop PDB Residue
1m1nB01 70 215
1m1nB02 216 320
1m1nB03 365 470
1m1nB04 321 364
1m1nB04 485 523

Structural Neighbourhood (48 entries)

There are 48 matching structural neighberhood comparisons for CATH ID 3.40.50.1980.5.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 48 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1h1lD03 93.34 Nitrogenase molybdenum-iron protein beta chainKlebsiella pneumoniae 3.40.50.1980 133 72 79 0.36 0.45
1mioB04 89.95 Nitrogenase molybdenum-iron protein beta chainClostridium pasteurianum 3.40.50.1980 98 33 92 1.27 1.37
3eq2B01 81.74 Pseudomonas aeruginosaProbable two-component response regulator 3.40.50.2300 103 10 68 1.90 2.76
1mb3A00 80.60 Caulobacter vibrioidesTwo-component systemTwo-component system, cell cycle response regulator DivKPolar differentiation response regulatorCell cycle - Caulobacter 3.40.50.2300 115 9 64 2.24 3.48
3b2nA00 80.23 Similar to two-component response regulatorStaphylococcus aureus subsp. aureus Mu50 3.40.50.2300 119 8 62 1.84 2.96
1g7sA03 79.52 Methanothermobacter thermautotrophicus str. Delta HTranslation initiation factor IF-2 unclassified subunitProbable translation initiation factor IF-2 3.40.50.10050 81 6 68 3.23 4.69
3cg0A00 79.45 Desulfovibrio desulfuricans subsp. desulfuricans str. G20Response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor 3.40.50.2300 121 8 56 1.50 2.67
3gl9B00 78.97 Thermotoga maritimaResponse regulatorTwo-component system, unclassified family, response regulatorProtein binding 3.40.50.2300 118 9 61 2.27 3.72
2qv0A00 78.88 Protein mrkEKlebsiella pneumoniae 3.40.50.2300 122 7 60 1.91 3.15
1dz3A00 78.49 Geobacillus stearothermophilusStage 0 sporulation protein A 3.40.50.2300 123 6 57 1.93 3.34
1ys7A01 77.81 Transcriptional regulatory protein prrAMycobacterium tuberculosis 3.40.50.2300 122 12 57 2.02 3.52
2jbaA00 77.75 Two-component systemPhosphate regulon transcriptional regulatory protein phoBTwo-component system, OmpR family, phosphate regulon response regulator PhoBProtein bindingEscherichia coli K-12 3.40.50.2300 125 7 60 2.25 3.75
1s8nA01 77.59 Response regulator NasTProbable transcriptional regulatory protein pdtaRMycobacterium tuberculosis 3.40.50.2300 132 15 52 1.71 3.27
2b4aA00 77.45 BH3024 proteinBacillus halodurans 3.40.50.2300 116 11 58 2.00 3.41
1a04A01 77.29 Two-component systemTwo-component system, NarL family, nitrate/nitrite response regulator NarLProtein bindingEscherichia coli K-12Nitrate/nitrite response regulator protein narL 3.40.50.2300 124 7 56 1.89 3.35
1srrC00 77.09 Sporulation initiation phosphotransferase FTwo-component system, response regulator, stage 0 sporulation protein FBacillus subtilisTwo-component system 3.40.50.2300 121 8 60 2.24 3.71
1zgzA00 76.90 Two-component systemTorCAD operon transcriptional regulatory protein torRTwo-component system, OmpR family, torCAD operon response regulator TorRProtein bindingEscherichia coli K-12 3.40.50.2300 118 8 60 2.54 4.22
1dcfA00 76.88 Response to insectResponse to abscisic acid stimulusResponse to heatResponse to gibberellin stimulusDefense response to bacterium 3.40.50.2300 133 8 54 1.97 3.59
1yqeA02 76.59 Hypothetical proteinArchaeoglobus fulgidusD-tyrosyl-tRNA(Tyr) deacylase 3.40.50.10700 96 7 71 3.39 4.73
2qzjA00 76.42 Two-component response regulatorClostridium difficile 630 3.40.50.2300 119 12 57 2.18 3.81
1jbeA00 76.41 Bacterial chemotaxisTwo-component systemEscherichia coli O157:H7Two-component system, chemotaxis family, response regulator CheYChemotaxis protein cheY 3.40.50.2300 125 11 56 2.28 4.07
1dbwB00 76.40 Sinorhizobium melilotiTranscriptional regulatory protein fixJ 3.40.50.2300 125 7 58 2.20 3.77
2rdmA00 76.22 Response regulator receiver proteinSinorhizobium medicae WSM419 3.40.50.2300 117 6 56 2.23 3.95
2zayA00 75.99 Response regulator receiver proteinDesulfuromonas acetoxidans DSM 684 3.40.50.2300 123 7 58 2.41 4.12
2qsjB00 75.96 DNA-binding response regulator, LuxR familyRuegeria pomeroyi 3.40.50.2300 122 4 56 1.92 3.39
1a2oA01 75.95 Bacterial chemotaxisTwo-component systemChemotaxis response regulator protein-glutamate methylesteraseTwo-component system, chemotaxis family, response regulator CheB [EC:3.1.1.61]Salmonella enterica subsp. enterica serovar Typhimurium 3.40.50.2300 133 10 51 2.01 3.87
1efdN01 75.87 ABC transportersIron(3+)-hydroxamate-binding protein fhuDIron complex transport system substrate-binding proteinEscherichia coli K-12 3.40.50.1980 91 16 78 3.91 4.99
1qkkA00 75.63 Sinorhizobium melilotiTwo-component systemTwo-component system, NtrC family, C4-dicarboxylate transport response regulator DctDC4-dicarboxylate transport transcriptional regulatory protein dctD 3.40.50.2300 139 11 52 2.30 4.38
3gt7A00 75.58 Sensor proteinSyntrophus aciditrophicus SB 3.40.50.2300 131 9 54 2.22 4.10
3cnbA00 75.41 DNA-binding response regulator, merR familyColwellia psychrerythraea 34H 3.40.50.2300 124 14 61 2.51 4.10
2r25B00 75.31 MAPK signaling pathway - yeastResponse to hydrogen peroxideProtein bindingOsmosensor activityOsomolarity two-component system, sensor histidine kinase SLN1 [EC:2.7.13.3] 3.40.50.2300 131 9 54 2.18 4.02
1p2fA01 75.30 Thermotoga maritimaResponse regulatorTwo-component system, OmpR family, response regulator 3.40.50.2300 117 8 58 2.24 3.85
1w25B02 75.15 Two-component systemCell cycle - CaulobacterCaulobacter vibrioidesIdentical protein bindingTwo-component system, cell cycle response regulator 3.40.50.2300 143 9 51 2.43 4.76
2qr3A00 75.14 Bacteroides fragilisTwo-component system response regulator 3.40.50.2300 119 6 57 2.02 3.54
1cdzA00 75.08 DNA repair protein XRCC1Homo sapiensProtein binding 3.40.50.10190 96 11 59 2.34 3.94
3cz5B00 75.01 Two-component response regulator, LuxR familyAurantimonas manganoxydans SI85-9A1 3.40.50.2300 140 9 52 1.98 3.75
1ny5A01 74.53 Transcriptional regulator (NtrC family)Two-component system, NtrC family, response regulatorAquifex aeolicus 3.40.50.2300 136 8 50 2.12 4.18
2rjnA00 74.50 Response regulator receiver:Metal-dependent phosphohydrolase, HD subdomainNeptuniibacter caesariensis 3.40.50.2300 135 6 51 1.85 3.62
2ayzA00 74.31 Two-component systemTwo-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]Sensor kinase protein rcsCEscherichia coli K-12 3.40.50.2300 133 9 52 2.24 4.26
1k68A00 74.30 Tolypothrix sp. PCC 7601Response regulator 3.40.50.2300 139 9 51 2.38 4.59
1m1nA01 74.29 Azotobacter vinelandiiNitrogenase molybdenum-iron protein alpha chain 3.40.50.1980 194 16 48 1.90 3.92
2qvgA00 74.21 Two component response regulator[EC:2.7.3.-]Legionella pneumophila subsp. pneumophila str. Philadelphia 1 3.40.50.2300 126 5 56 2.80 4.97
3cu5B00 73.96 Clostridium phytofermentans ISDgTwo component transcriptional regulator, AraC family 3.40.50.2300 129 7 57 2.56 4.46
2qxyA00 73.82 Thermotoga maritimaResponse regulatorTwo-component system, unclassified family, response regulator 3.40.50.2300 118 4 61 2.41 3.90
1p6qA00 73.71 CheY2Two-component system, chemotaxis family, response regulator CheYBacterial chemotaxisSinorhizobium melilotiTwo-component system 3.40.50.2300 129 7 58 2.54 4.31
2jk1A00 72.88 Hydrogenase transcriptional regulatory protein hupR1Rhodobacter capsulatus 3.40.50.2300 138 6 49 2.21 4.49
1t15A02 72.43 DNA damage response, signal transduction resulting in induction of apoptosisProtein ubiquitinationPositive regulation of DNA repairZinc ion bindingBreast cancer type 1 susceptibility protein 3.40.50.10190 104 5 54 2.54 4.64
3cwcB01 72.30 Glycerate kinase [EC:2.7.1.31]Glycerolipid metabolismSalmonella enterica subsp. enterica serovar TyphimuriumPutative glycerate kinase 2Glycine, serine and threonine metabolism 3.40.50.10350 137 9 47 1.84 3.88
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Displaying entries 1 to 48 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1m1nB03
KRFALWGDPDFVMGLVKFLLELGCEPVHILCHNGNKRWKKAVDAILAASPYGKNATVYIGKDLWHLRSLVFTDKPDFMIG
NSYGKFIQRDTLHKGKEFEVPLIRIG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1m1nB03
KRFALWGDPDFVMGLVKFLLELGCEPVHILCHNGNKRWKKAVDAILAASPYGKNATVYIGKDLWHLRSLVFTDKPDFMIG
NSYGKFIQRDTLHKGKEFEVPLIRIG
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:22

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:22

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:11

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"