CATH Domain: 1m1nA03 XML data for domain: 1m1nA03

Molscript image for 1m1nA03
1m1nA03
PDB coordinates for domain 1m1nA03

PDB 1m1n, Chain A, Domain 3

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.1980 Nitrogenase molybdenum iron protein domain Gene3D
3.40.50.1980.3
3.40.50.1980.3.1
3.40.50.1980.3.1.1
3.40.50.1980.3.1.1.1
3.40.50.1980.3.1.1.1.1

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Segment boundaries for domain 1m1nA03

Chopping figure for domain 1m1nA03
DomainStart PDB ResidueStop PDB Residue
1m1nA01 4 62
1m1nA01 345 479
1m1nA02 63 205
1m1nA03 206 320

Structural Neighbourhood (16 entries)

There are 16 matching structural neighberhood comparisons for CATH ID 3.40.50.1980.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 16 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1mioB02 81.01 Nitrogenase molybdenum-iron protein beta chainClostridium pasteurianum 3.40.50.1980 104 11 73 2.60 3.52
1srrC00 79.71 Sporulation initiation phosphotransferase FTwo-component system, response regulator, stage 0 sporulation protein FBacillus subtilisTwo-component system 3.40.50.2300 121 11 78 3.44 4.38
1n2zA01 79.42 ABC transportersPeriplasmic spaceVitamin B12-binding proteinCobalamin bindingVitamin B12 transport system substrate-binding protein 3.40.50.1980 119 13 76 3.67 4.80
3b2nA00 79.15 Similar to two-component response regulatorStaphylococcus aureus subsp. aureus Mu50 3.40.50.2300 119 6 78 3.58 4.58
1mb3A00 78.89 Caulobacter vibrioidesTwo-component systemTwo-component system, cell cycle response regulator DivKPolar differentiation response regulatorCell cycle - Caulobacter 3.40.50.2300 115 14 84 3.95 4.68
1m1nB02 78.74 Nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1]Nitrogen metabolismAzotobacter vinelandiiNitrogenase molybdenum-iron protein beta chainMetabolic pathways 3.40.50.1980 105 9 74 3.13 4.19
2qzjA00 78.49 Two-component response regulatorClostridium difficile 630 3.40.50.2300 119 11 75 3.66 4.84
3gl9B00 78.45 Thermotoga maritimaResponse regulatorTwo-component system, unclassified family, response regulatorProtein binding 3.40.50.2300 118 9 80 3.95 4.91
2b4aA00 77.94 BH3024 proteinBacillus halodurans 3.40.50.2300 116 12 81 3.64 4.49
3cnbA00 77.79 DNA-binding response regulator, merR familyColwellia psychrerythraea 34H 3.40.50.2300 124 9 76 3.73 4.87
2rdmA00 77.76 Response regulator receiver proteinSinorhizobium medicae WSM419 3.40.50.2300 117 11 82 4.08 4.92
1p2fA01 77.47 Thermotoga maritimaResponse regulatorTwo-component system, OmpR family, response regulator 3.40.50.2300 117 7 76 3.83 4.98
1t1jA00 77.22 Pseudomonas aeruginosaPutative uncharacterized protein 3.40.50.10400 119 6 72 3.13 4.33
3cx3A02 77.10 ABC transportersLipoproteinZinc transport system substrate-binding proteinStreptococcus pneumoniae R6 3.40.50.1980 107 12 75 3.06 4.04
2qr3A00 75.68 Bacteroides fragilisTwo-component system response regulator 3.40.50.2300 119 10 78 3.60 4.61
1toaA01 73.94 ABC transportersTreponema pallidumManganese/zinc/iron transport system substrate-binding proteinPeriplasmic zinc-binding protein troA 3.40.50.1980 143 6 64 3.20 4.97
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Displaying entries 1 to 16 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1m1nA03
VLGKRDEDTTFASTPYDVAIIGDYNIGGDAWSSRILLEEMGLRCVAQWSGDGSISEIELTPKVKLNLVHCYRSMNYISRH
MEEKYGIPWMEYNFFGPTKTIESLRAIAAKFDESI
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1m1nA03
VLGKRDEDTTFASTPYDVAIIGDYNIGGDAWSSRILLEEMGLRCVAQWSGDGSISEIELTPKVKLNLVHCYRSMNYISRH
MEEKYGIPWMEYNFFGPTKTIESLRAIAAKFDESI
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:21

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:21

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:11

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"