CATH Domain: 1lv7A02 XML data for domain: 1lv7A02

Molscript image for 1lv7A02
1lv7A02
PDB coordinates for domain 1lv7A02

PDB 1lv7, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.8 Helicase, Ruva Protein; domain 3
1.10.8.60 Gene3D
1.10.8.60.1
1.10.8.60.1.1
1.10.8.60.1.1.1
1.10.8.60.1.1.1.1
1.10.8.60.1.1.1.1.1

[top]
Segment boundaries for domain 1lv7A02

Chopping figure for domain 1lv7A02
DomainStart PDB ResidueStop PDB Residue
1lv7A01 144 323
1lv7A02 325 399

Structural Neighbourhood (20 entries)

There are 20 matching structural neighberhood comparisons for CATH ID 1.10.8.60.1.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 20 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1e32A04 91.11 Mus musculusPolyubiquitin bindingProtein complexAggresome assemblyTransitional endoplasmic reticulum ATPase 1.10.8.60 87 40 80 0.95 1.18
1r7rA06 90.25 Mus musculusPolyubiquitin bindingProtein complexAggresome assemblyTransitional endoplasmic reticulum ATPase 1.10.8.60 58 5 77 0.99 1.28
1in4A03 88.18 Holliday junction DNA helicase RuvBThermotoga maritimaHomologous recombinationHolliday junction ATP-dependent DNA helicase ruvB 1.10.8.60 75 10 96 3.29 3.43
2fnaA02 84.54 Sulfolobus solfataricusPutative uncharacterized protein 1.10.8.60 74 6 80 2.27 2.84
1ny5B03 84.03 Transcriptional regulator (NtrC family)Two-component system, NtrC family, response regulatorAquifex aeolicus 1.10.8.60 74 9 85 2.78 3.26
2chgA02 83.78 Archaeoglobus fulgidusReplication factor C small subunitReplication factor C small subunit 1.10.8.60 66 13 85 2.68 3.14
1r6bX03 83.59 ATP-dependent Clp protease ATP-binding subunit clpAATP-dependent Clp protease ATP-binding subunit ClpAProtein bindingEscherichia coli K-12 1.10.8.60 88 12 81 2.90 3.54
1fnnA01 83.41 Pyrobaculum aerophilumCell division control protein 6 (Cdc6), putativeArchaeal cell division control protein 6 1.10.8.60 101 13 71 2.36 3.31
1jr3D03 83.29 Pyrimidine metabolismDNA replicationPurine metabolismMetabolic pathwaysHomologous recombination 1.10.8.60 71 11 92 3.12 3.39
1sxjD02 83.10 DNA replicationNucleotide excision repairLeading strand elongationCell cycle checkpointProtein binding 1.10.8.60 70 12 90 2.86 3.15
1sxjC02 82.52 Nucleotide excision repairDNA replicationLeading strand elongationReplication factor C subunit 3Replication factor C subunit 3/5 1.10.8.60 69 8 89 3.11 3.48
1jqjD03 81.24 Pyrimidine metabolismDNA replicationPurine metabolismMetabolic pathwaysHomologous recombination 1.10.8.60 86 10 81 3.97 4.88
1d2nA02 80.67 Vesicle-fusing ATPaseCricetulus griseusProtein binding 1.10.8.60 67 7 84 3.27 3.89
2bjwA02 80.29 TranscriptionTranscription activator activityTranscription repressor activityPsp operon transcriptional activatorPsp operon transcriptional activator 1.10.8.60 79 6 84 3.82 4.50
1nvmA02 79.66 Pseudomonas sp. CF6004-hydroxy-2-oxovalerate aldolase 1.10.8.60 64 4 81 3.89 4.78
1l8qA02 78.48 Two-component systemChromosomal replication initiator proteinChromosomal replication initiator protein dnaAAquifex aeolicus 1.10.8.60 49 14 62 2.62 4.18
1qzmA00 78.26 Serine-type endopeptidase activityATP-dependent Lon protease [EC:3.4.21.53]ATP-dependent protease LaResponse to heatProteolysis 1.10.8.60 94 9 77 3.80 4.89
2zc2A00 77.74 DNA replication proteinStreptococcus mutansPutative uncharacterized protein 1.10.10.630 74 6 82 3.14 3.80
1njgB01 77.40 Pyrimidine metabolismDNA replicationPurine metabolismMetabolic pathwaysHomologous recombination 1.10.8.60 73 13 82 3.86 4.67
1im2A03 76.66 ATP-dependent hsl protease ATP-binding subunit hslUHaemophilus influenzaeATP-dependent HslUV protease ATP-binding subunit HslU 1.10.8.60 94 12 73 3.37 4.59
[1]
Displaying entries 1 to 20 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1lv7A02
PDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGL
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1lv7A02
PDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGLE
BLAST against CATH

[top]
Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 18:08

Assigning to "1.10.8.60" based on similarity with "1ixzA02" (NWSI: 57.9710144927536, NWO: 90.7894736842105, SPS: 94.43, SPO: 90, RMSD: 0.78)

Flow stage update by auto on 28 Apr 2006 17:49

NW result present for Domain "1lv7A02"

Flow stage update by auto on 28 Apr 2006 17:43

All required files are present for Domain "1lv7A02"

Flow stage update by auto on 27 Apr 2006 17:30

Beginning processing for Domain "1lv7A02"

Insertion by auto on 05 Mar 2006 23:27

Cut based on decision in database "DomChop" on "cathdb"