CATH Domain: 1lqlA01 XML data for domain: 1lqlA01

Molscript image for 1lqlA01
1lqlA01
PDB coordinates for domain 1lqlA01

PDB 1lql, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.20 Single Sheet
2.20.25 N-terminal domain of TfIIb
2.20.25.10 Gene3D
2.20.25.10.13
2.20.25.10.13.1
2.20.25.10.13.1.1
2.20.25.10.13.1.1.1
2.20.25.10.13.1.1.1.1

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Segment boundaries for domain 1lqlA01

Chopping figure for domain 1lqlA01
DomainStart PDB ResidueStop PDB Residue
1lqlA01 4 29
1lqlA02 39 141

Structural Neighbourhood (7 entries)

There are 7 matching structural neighberhood comparisons for CATH ID 2.20.25.10.13.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 7 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2iv2X01 72.98 Methane metabolismMetabolic pathwaysGlyoxylate and dicarboxylate metabolismFormate dehydrogenase HFormate dehydrogenase, alpha subunit [EC:1.2.1.2] 2.20.25.90 55 3 41 1.49 3.56
2airB02 72.67 Pyrimidine metabolismAlanine, aspartate and glutamate metabolismMetabolic pathwaysCytoplasmAspartate carbamoyltransferase regulatory subunit 2.30.30.20 53 54 47 1.92 4.07
1q16A03 72.40 Nitrogen metabolismTwo-component systemProtein bindingRespiratory nitrate reductase 1 alpha chainEscherichia coli K-12 2.20.25.90 47 7 46 1.86 3.97
1qypA00 71.22 Thermococcus celerDNA-directed RNA polymerase subunit M 2.20.25.10 57 3 45 2.27 4.98
2ywwB02 70.53 Pyrimidine metabolismMethanocaldococcus jannaschiiAspartate carbamoyltransferase regulatory subunitAlanine, aspartate and glutamate metabolismAspartate carbamoyltransferase regulatory chain 2.30.30.20 51 7 47 1.79 3.80
1y1vS01 68.60 Transcription elongation factor S-IITranscription elongation from RNA polymerase II promoterPositive transcription elongation factor activityProtein bindingTranscription elongation factor S-II 2.20.25.10 70 3 37 1.77 4.77
1h54A03 67.53 Lactobacillus brevisHydrolase 2.60.420.10 74 11 33 1.56 4.62
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Displaying entries 1 to 7 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1lqlA01
KYDITAVLNEDSSMTAISDQFQITLD
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1lqlA01
KYDITAVLNEDSSMTAISDQFQITLD
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 05 Mar 2006 17:10

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"