CATH Domain: 1lqaA00 XML data for domain: 1lqaA00

Molscript image for 1lqaA00
1lqaA00
PDB coordinates for domain 1lqaA00

PDB 1lqa, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.20 Alpha-Beta Barrel
3.20.20 TIM Barrel
3.20.20.100 NADP-dependent oxidoreductase Gene3D
3.20.20.100.7
3.20.20.100.7.1
3.20.20.100.7.1.1
3.20.20.100.7.1.1.1
3.20.20.100.7.1.1.1.1

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Segment boundaries for domain 1lqaA00

Chopping figure for domain 1lqaA00
DomainStart PDB ResidueStop PDB Residue
1lqaA00 1 346

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 3.20.20.100.7.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3eauA00 88.01 Rattus norvegicusVoltage-gated potassium channel subunit beta-2Potassium voltage-gated channel, Shaker-related subfamily A, beta member 2Protein heterooligomerizationProtein binding 3.20.20.100 327 29 90 2.27 2.52
2wzmA00 82.22 Uncharacterized oxidoreductase MSMEG_2407Mycobacterium smegmatis str. MC2 155 3.20.20.100 274 21 74 2.29 3.07
1ur3M00 81.77 Escherichia coli K-12Oxidoreductase ydhF 3.20.20.100 290 20 82 3.19 3.86
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1lqaA00
MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSRE
KLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDT
LDALAEYQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFGT
LTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQPFVASTLLGATTMDQLKTNIE
SLHLELSEDVLAEIEAVHQVYTYPAP
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1lqaA00
MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSRE
KLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDT
LDALAEYQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFGT
LTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQPFVASTLLGATTMDQLKTNIE
SLHLELSEDVLAEIEAVHQVYTYPAP
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:57

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:57

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:23

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"