CATH Domain: 1lp1B00 XML data for domain: 1lp1B00

Molscript image for 1lp1B00
1lp1B00
PDB coordinates for domain 1lp1B00

PDB 1lp1, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.5 Single alpha-helices involved in coiled-coils or other helix-helix interfaces
1.20.5.420 Immunoglobulin FC, subunit C Gene3D
1.20.5.420.4
1.20.5.420.4.1
1.20.5.420.4.1.1
1.20.5.420.4.1.1.1
1.20.5.420.4.1.1.1.1

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Segment boundaries for domain 1lp1B00

Chopping figure for domain 1lp1B00
DomainStart PDB ResidueStop PDB Residue
1lp1B00 4 57

Structural Neighbourhood (14 entries)

There are 14 matching structural neighberhood comparisons for CATH ID 1.20.5.420.4.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 14 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1deeG00 94.56 Staphylococcus aureus subsp. aureus NCTC 8325Immunoglobulin G-binding protein A 1.20.5.420 51 76 92 0.72 0.78
2otkE00 88.99 1.20.5.420 43 74 79 2.42 3.04
1t6oA00 88.75 Measles virus strain MoratenPhosphoprotein 1.10.8.10 49 14 87 2.37 2.72
1oksA00 87.20 Measles virus strain EdmonstonPhosphoprotein 1.10.8.10 50 14 88 2.22 2.50
1vq8P03 85.61 50S ribosomal protein L19eRibosomeLarge subunit ribosomal protein L19eHaloarcula marismortui 1.10.1200.60 55 9 83 2.48 2.97
2j5yA00 84.52 Peptostreptococcal albumin-binding proteinFinegoldia magna 1.10.8.40 61 9 75 1.87 2.48
1ixrB03 81.06 Homologous recombinationThermus thermophilus HB8Holliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAProtein binding 1.10.8.10 53 13 85 3.81 4.47
1bvsF03 80.13 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAMycobacterium lepraeHolliday junction DNA helicase RuvA 1.10.8.10 45 11 79 3.84 4.82
3frhA01 79.06 16S rRNA methylaseEscherichia coli 1.10.8.10 58 3 89 4.42 4.93
1vpuA00 78.08 Protein VpuHuman immunodeficiency virus type 1 (SF162 ISOLATE) 1.10.195.10 45 4 77 3.37 4.33
2gm6A01 76.94 Ralstonia eutropha JMP134Cysteine dioxygenase type I 1.20.5.440 38 15 53 1.71 3.18
1fqjB02 75.22 Regulator of G-protein signaling 9Bos taurusRegulator of G-protein signaling 9 1.10.167.10 79 12 63 3.03 4.79
1d66B02 62.26 Regulatory protein GAL4NucleusSequence-specific DNA binding transcription factor activityTranscription activator activityPositive regulation of transcription by galactose 1.20.5.640 15 20 27 0.58 2.09
1mkmA02 60.15 Thermotoga maritimaTranscriptional regulator, IclR family 1.20.5.640 14 0 25 0.97 3.74
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Displaying entries 1 to 14 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1lp1B00
KFNKEQQNAFYEILHLPNLNEEQRNAFIQSLKDDPSQSANLLAEAKKLNDAQAP
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1lp1B00
VDNKFNKEQQNAFYEILHLPNLNEEQRNAFIQSLKDDPSQSANLLAEAKKLNDAQAPK
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:39

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"