CATH Domain: 1lopA00 XML data for domain: 1lopA00

Molscript image for 1lopA00
1lopA00
PDB coordinates for domain 1lopA00

PDB 1lop, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.100 Cyclophilin
2.40.100.10 Cyclophilin Gene3D
2.40.100.10.3
2.40.100.10.3.2
2.40.100.10.3.2.1
2.40.100.10.3.2.1.1
2.40.100.10.3.2.1.1.1

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Segment boundaries for domain 1lopA00

Chopping figure for domain 1lopA00
DomainStart PDB ResidueStop PDB Residue
1lopA00 1 164

Structural Neighbourhood (4 entries)

There are 4 matching structural neighberhood comparisons for CATH ID 2.40.100.10.3.2.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 4 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1zkcB01 90.34 Protein polyubiquitinationPeptidyl-prolyl cis-trans isomerase-like 2NucleusHomo sapiensUbiquitin mediated proteolysis 2.40.100.10 160 32 92 2.05 2.21
3bo7B00 90.30 Peptidyl-prolyl cis-trans isomerase, cyclophilin-typeToxoplasma gondii 2.40.100.10 166 27 90 1.99 2.19
1mzwA00 89.02 SpliceosomePeptidyl-prolyl isomerase H (cyclophilin H) [EC:5.2.1.8]Cyclosporin A bindingPeptidyl-prolyl cis-trans isomerase activityProtein binding 2.40.100.10 173 31 89 2.44 2.74
3bkpA00 88.24 Toxoplasma gondiiCyclophilin 2.40.100.10 175 28 86 2.02 2.33
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Displaying entries 1 to 4 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1lopA00
MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTR
GTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIESV
TVSE
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1lopA00
MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTR
GTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIESV
TVSE
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:32

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:32

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:54

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"