CATH Domain: 1lmb400 XML data for domain: 1lmb400

Molscript image for 1lmb400
1lmb400
PDB coordinates for domain 1lmb400

PDB 1lmb, Chain 4, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.260 434 Repressor (Amino-terminal Domain)
1.10.260.40 lambda repressor-like DNA-binding domains Gene3D
1.10.260.40.3
1.10.260.40.3.1
1.10.260.40.3.1.2
1.10.260.40.3.1.2.1
1.10.260.40.3.1.2.1.2

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Segment boundaries for domain 1lmb400

Chopping figure for domain 1lmb400
DomainStart PDB ResidueStop PDB Residue
1lmb400 1 92

Structural Neighbourhood (10 entries)

There are 10 matching structural neighberhood comparisons for CATH ID 1.10.260.40.3.1.2.1.2 (SIMAX score < 5)

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Displaying entries 1 to 10 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3eusB00 86.93 Ruegeria pomeroyiDNA-binding protein, putative 1.10.260.40 77 19 92 4.06 4.39
1utxA00 85.63 CylR2Enterococcus faecalis 1.10.260.40 66 16 82 3.33 4.04
1y9qA01 85.28 Vibrio choleraeTranscriptional regulator, HTH_3 family 1.10.260.40 83 18 89 3.72 4.17
2ofyA01 84.87 Rhodococcus jostii RHA1Putative uncharacterized protein 1.10.260.40 65 15 78 2.45 3.11
2r1jL00 84.74 Repressor protein C2Enterobacteria phage P22 1.10.260.40 66 13 82 3.25 3.94
3b7hA00 83.72 Prophage Lp1 protein 11Lactobacillus plantarum 1.10.260.40 76 19 93 4.50 4.80
1e3oC01 82.52 Sequence-specific DNA binding transcription factor activityPOU domain transcription factor, class 2Negative regulation of transcription, DNA-dependentSequence-specific DNA bindingTranscription repressor activity 1.10.260.40 71 14 73 2.43 3.29
1r69A00 81.47 Repressor protein CIPhage 434 1.10.260.40 63 28 75 3.15 4.20
3bd1B00 80.64 Xylella fastidiosa subsp. sandyi Ann-1Putative uncharacterized protein 1.10.260.40 62 17 75 2.60 3.47
3bs3A00 80.11 Bacteroides fragilis NCTC 9343Putative DNA-binding protein 1.10.260.40 49 14 61 2.09 3.41
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Displaying entries 1 to 10 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1lmb400
STKKKPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSPSI
AREIYEMYEAVS
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1lmb400
STKKKPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSPSI
AREIYEMYEAVS
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:07

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:07

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:26

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"