CATH Domain: 1lm4B00 XML data for domain: 1lm4B00

Molscript image for 1lm4B00
1lm4B00
PDB coordinates for domain 1lm4B00

PDB 1lm4, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.90 Alpha-Beta Complex
3.90.45 Peptide Deformylase
3.90.45.10 Peptide Deformylase Gene3D
3.90.45.10.2
3.90.45.10.2.2
3.90.45.10.2.2.1
3.90.45.10.2.2.1.1
3.90.45.10.2.2.1.1.1

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Segment boundaries for domain 1lm4B00

Chopping figure for domain 1lm4B00
DomainStart PDB ResidueStop PDB Residue
1lm4B00 0 183

Structural Neighbourhood (1 entries)

There are 1 matching structural neighberhood comparisons for CATH ID 3.90.45.10.2.2.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 1 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1lmeA00 88.48 Thermotoga maritimaPeptide deformylase[EC:3.5.1.88] 3.90.45.10 153 31 81 1.66 2.05
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Displaying entries 1 to 1 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1lm4B00
HMLTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLAAPQINISKRMIAVLIPD
DGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGLSVDDNVAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLN
GVMFYDHIDKNHPLQPHTDAVEV
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1lm4B00
GSDKIHHHHHHMLTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLAAPQINIS
KRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGXLSVDDNVAGLVHRHNRITIKAKDIEGNDIQLRLKGYPA
IVFQHEIDHLNGVMFYDHIDKNHPLQPHTDAVEV
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:32

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:32

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:56

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"