CATH Domain: 1llmC01 XML data for domain: 1llmC01

Molscript image for 1llmC01
1llmC01
PDB coordinates for domain 1llmC01

PDB 1llm, Chain C, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.160 Double Stranded RNA Binding Domain
3.30.160.60 Classic Zinc Finger Gene3D
3.30.160.60.1
3.30.160.60.1.1
3.30.160.60.1.1.1
3.30.160.60.1.1.1.1
3.30.160.60.1.1.1.1.1

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Segment boundaries for domain 1llmC01

Chopping figure for domain 1llmC01
DomainStart PDB ResidueStop PDB Residue
1llmC01 101 130
1llmC02 131 187

Structural Neighbourhood (27 entries)

There are 27 matching structural neighberhood comparisons for CATH ID 3.30.160.60.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 27 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1meyC03 94.77 3.30.160.60 29 51 90 0.55 0.61
1a1hA01 93.73 Early growth response protein 1Early growth response protein 1Prion diseasesNucleusResponse to insulin stimulus 3.30.160.60 30 50 93 0.89 0.95
1ubdC02 93.54 Zinc ion bindingTranscription coactivator activityTranscriptional repressor protein YY1Transcription factor YYSequence-specific DNA binding transcription factor activity 3.30.160.60 27 33 90 0.63 0.70
1tf6A04 93.46 Xenopus laevisTranscription factor IIIA 3.30.160.60 30 23 93 0.99 1.06
1ubdC04 92.01 Zinc ion bindingTranscription coactivator activityTranscriptional repressor protein YY1Transcription factor YYSequence-specific DNA binding transcription factor activity 3.30.160.60 29 34 90 0.89 0.99
1x5wA01 91.88 Homo sapiensZinc finger protein 64 homolog, isoforms 1 and 2 3.30.160.60 28 28 93 1.61 1.73
1tf6A02 90.97 Xenopus laevisTranscription factor IIIA 3.30.160.60 29 44 90 1.37 1.52
2adrA01 90.40 NucleusRegulation of carbohydrate metabolic processPeroxisome organizationNegative regulation of transcription from RNA polymerase II promoter by glucoseRegulatory protein ADR1 3.30.160.60 29 48 96 2.29 2.37
2drpA02 90.15 Brain morphogenesisChromatin bindingDorsal appendage formationDrosophila melanogasterPeripheral nervous system development 3.30.160.60 29 27 93 1.84 1.97
1tf6D01 89.58 Xenopus laevisTranscription factor IIIA 3.30.160.60 33 26 84 1.03 1.21
1ubdC01 89.40 Zinc ion bindingTranscription coactivator activityTranscriptional repressor protein YY1Transcription factor YYSequence-specific DNA binding transcription factor activity 3.30.160.60 28 21 86 1.15 1.33
1bboA02 89.15 DNA bindingZinc finger protein 40NucleusHomo sapiensHuman immunodeficiency virus type I enhancer-binding protein 3.30.160.60 31 26 96 3.18 3.29
1tf3A01 88.88 Xenopus laevisTranscription factor IIIA 3.30.160.60 30 30 93 1.67 1.79
2gliA04 88.59 Positive regulation of transcription from RNA polymerase II promoterPositive regulation of DNA replicationEpidermal cell differentiationCytosolRegulation of smoothened signaling pathway 3.30.160.60 31 23 93 1.89 2.02
2drpA01 88.56 Brain morphogenesisDorsal appendage formationChromatin bindingDrosophila melanogasterPeripheral nervous system development 3.30.160.60 34 16 82 1.78 2.16
1tf6A03 88.11 Xenopus laevisTranscription factor IIIA 3.30.160.60 34 20 88 1.80 2.04
2gliA01 86.46 Positive regulation of transcription from RNA polymerase II promoterPositive regulation of DNA replicationEpidermal cell differentiationCytosolRegulation of smoothened signaling pathway 3.30.160.60 33 26 84 2.55 3.01
1un6D02 86.07 Xenopus laevisTranscription factor IIIA 3.30.160.60 31 10 90 1.99 2.20
1rmdA02 84.47 Endonuclease activityDeathZinc ion bindingProtein homodimerization activityNucleus 3.30.160.60 30 13 90 3.27 3.63
1kyqA02 83.28 Identical protein bindingPrecorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:1.3.1.76 4.99.1.4]Siroheme biosynthetic processMetabolic pathwaysPrecorrin-2 dehydrogenase activity 3.30.160.110 37 10 70 1.01 1.44
2r1fA03 82.51 Escherichia coli K-12UPF0755 protein yceG 3.30.160.60 39 0 76 3.04 3.95
1llmD02 79.69 Early growth response protein 1Prion diseasesPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyResponse to insulin stimulusNegative regulation of transcription from RNA polymerase II promoter 3.30.160.60 55 40 50 2.38 4.67
3bidA01 78.69 Neisseria meningitidis serogroup BUPF0339 protein NMB1088 3.30.160.160 46 3 63 2.25 3.57
1yuiA00 78.43 Drosophila melanogasterPositive regulation of transcription, DNA-dependentTranscription factor GAGACentromeric heterochromatinProtein heterodimerization activity 3.30.160.60 54 26 55 2.51 4.52
1ncsA00 77.12 Regulation of transcription involved in G1 phase of mitotic cell cycleNucleusProtein bindingTranscriptional factor SWI5Cytoplasm 3.30.160.60 47 33 63 2.42 3.79
1bbgA00 76.31 Pollen allergen Amb t 5Ambrosia trifida 3.30.160.80 40 3 60 1.99 3.32
1pjqA02 76.02 Porphyrin and chlorophyll metabolismSalmonella enterica subsp. enterica serovar TyphimuriumSiroheme synthaseUroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]Metabolic pathways 3.30.160.110 35 13 77 3.24 4.20
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Displaying entries 1 to 27 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1llmC01
MKPFQCRICMRNFSRSDHLTTHIRTHTGEK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1llmC01
MKPFQCRICMRNFSRSDHLTTHIRTHTGEK
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:01

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:01

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:09

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"