CATH Domain: 1ljoA00 XML data for domain: 1ljoA00

Molscript image for 1ljoA00
1ljoA00
PDB coordinates for domain 1ljoA00

PDB 1ljo, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.30 Roll
2.30.30 SH3 type barrels.
2.30.30.100 Gene3D
2.30.30.100.6
2.30.30.100.6.1
2.30.30.100.6.1.1
2.30.30.100.6.1.1.1
2.30.30.100.6.1.1.1.1

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Segment boundaries for domain 1ljoA00

Chopping figure for domain 1ljoA00
DomainStart PDB ResidueStop PDB Residue
1ljoA00 1 75

Structural Neighbourhood (13 entries)

There are 13 matching structural neighberhood comparisons for CATH ID 2.30.30.100.6.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 13 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1n9rB00 90.43 Protein bindingNuclear mRNA splicing, via spliceosomeSmall nuclear ribonucleoprotein FSmall nuclear ribonucleoprotein FU5 snRNP 2.30.30.100 69 31 89 1.75 1.96
1d3bB00 89.01 Small nuclear ribonucleoprotein-associated proteins B and B'Spliceosomal complexU7 snRNPHomo sapiensProtein binding 2.30.30.100 81 22 82 2.50 3.02
1b34B00 88.86 SpliceosomeSpliceosomal complexSmall nuclear ribonucleoprotein Sm D2Homo sapiensSmall nuclear ribonucleoprotein D2 2.30.30.100 74 18 88 1.72 1.95
1b34A00 88.81 SpliceosomeSystemic lupus erythematosusSmall nuclear ribonucleoprotein Sm D1RNA bindingProtein binding 2.30.30.100 80 20 87 2.70 3.09
3bw1A00 88.47 U6 snRNA-associated Sm-like protein LSm3Small nucleolar ribonucleoprotein complexRNA degradationNucleolusRNA binding 2.30.30.100 86 26 86 3.16 3.67
1ib8A02 83.80 Hypothetical proteinRibosome maturation factor rimPStreptococcus pneumoniae 2.30.30.180 67 16 84 2.41 2.87
3by7E00 82.74 2.30.30.100 74 10 74 2.33 3.12
3fb9B00 81.10 Streptococcus pneumoniaePutative uncharacterized protein 2.30.30.100 84 12 80 4.04 4.99
1biaA03 79.14 Biotin metabolismDNA bindingBirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]Bifunctional protein birABiotin-[acetyl-CoA-carboxylase] ligase activity 2.30.30.100 47 12 62 2.67 4.26
2k57A00 78.13 Pseudomonas syringae pv. phaseolicola 1448ALipoprotein, putative 2.30.30.100 55 3 68 3.12 4.59
2g3rA01 77.17 CytoplasmHomo sapiensTumor suppressor p53-binding protein 1Protein binding 2.30.30.140 53 15 66 2.71 4.07
1mhnA00 76.53 Survival motor neuron proteinSurvival motor neuron proteinHomo sapiensProtein binding 2.30.30.140 59 5 73 3.49 4.76
1pm3A00 76.48 Methanothermobacter thermautotrophicus str. Delta HPutative uncharacterized protein 2.30.30.240 69 20 70 3.43 4.85
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Displaying entries 1 to 13 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ljoA00
GAMVLPNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEEKVRSLGEIVLRGNNVVLIQPQ
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ljoA00
GAMVLPNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEEKVRSLGEIVLRGNNVVLIQPQEE
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:24

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:24

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:48

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"