CATH Domain: 1lj5A02 XML data for domain: 1lj5A02

Molscript image for 1lj5A02
1lj5A02
PDB coordinates for domain 1lj5A02

PDB 1lj5, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.30 Roll
2.30.39 Alpha-1-antitrypsin; domain 1
2.30.39.10 Alpha-1-antitrypsin, domain 1 Gene3D
2.30.39.10.9
2.30.39.10.9.1
2.30.39.10.9.1.1
2.30.39.10.9.1.1.1
2.30.39.10.9.1.1.1.1

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Segment boundaries for domain 1lj5A02

Chopping figure for domain 1lj5A02
DomainStart PDB ResidueStop PDB Residue
1lj5A01 1 170
1lj5A01 281 325
1lj5A01 336 345
1lj5A02 171 280
1lj5A02 326 335
1lj5A02 346 379

Structural Neighbourhood (4 entries)

There are 4 matching structural neighberhood comparisons for CATH ID 2.30.39.10.9.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 4 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3f02B02 79.66 Peripheral nervous system developmentNeuroserpinHomo sapiensCentral nervous system developmentSerine-type endopeptidase inhibitor activity 2.30.39.10 99 35 64 3.08 4.79
2h4pA02 78.95 Gallus gallusHeterochromatin-associated protein MENT 2.30.39.10 102 27 62 3.10 4.92
1hp7A01 78.43 Alpha-1-antitrypsinProtease bindingAlpha-1-antitrypsinHomo sapiensExtracellular space 2.30.39.10 95 29 61 2.70 4.38
1mtpA02 76.65 Proteinase inhibitor I4, serpinThermobifida fusca YX 2.30.39.10 91 24 59 2.87 4.86
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Displaying entries 1 to 4 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1lj5A02
FNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAAPYEKEVPLSAL
TNILSAQLISHWKGNMTRLPRLLVLPKFSLIEVNESGTVARMAPEEIIMDRPFLFVVRHNPTGTVLFMGQVMEP
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1lj5A02
FNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAAPYEKEVPLSAL
TNILSAQLISHWKGNMTRLPRLLVLPKFSLIEVNESGTVARMAPEEIIMDRPFLFVVRHNPTGTVLFMGQVMEP
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:25

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:25

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:09

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"