CATH Domain: 1li4A02 XML data for domain: 1li4A02

Molscript image for 1li4A02
1li4A02
PDB coordinates for domain 1li4A02

PDB 1li4, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.720 NAD(P)-binding Rossmann-like Domain Gene3D
3.40.50.720.130
3.40.50.720.130.1
3.40.50.720.130.1.1
3.40.50.720.130.1.1.1
3.40.50.720.130.1.1.1.1

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Segment boundaries for domain 1li4A02

Chopping figure for domain 1li4A02
DomainStart PDB ResidueStop PDB Residue
1li4A01 3 192
1li4A01 353 404
1li4A02 193 352

Structural Neighbourhood (33 entries)

There are 33 matching structural neighberhood comparisons for CATH ID 3.40.50.720.130.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 33 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3d4oA02 84.88 Dipicolinate synthase subunit ABacillus haloduransDipicolinate synthase subunit A 3.40.50.720 139 15 80 2.42 3.02
1vj0A02 81.71 Butanoate metabolismThermotoga maritima[EC:1.1.1.-]Alcohol dehydrogenase, zinc-containingFructose and mannose metabolism 3.40.50.720 147 14 80 2.89 3.58
1vi2A02 81.69 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysQuinate/shikimate dehydrogenaseQuinate/shikimate dehydrogenase [EC:1.1.1.282]Shikimate 5-dehydrogenase activity 3.40.50.720 147 12 77 2.60 3.35
1pl8A02 81.56 Membrane fractionZinc ion bindingL-iditol 2-dehydrogenase [EC:1.1.1.14]Sorbitol catabolic processGlucose metabolic process 3.40.50.720 139 12 76 2.82 3.67
1gpjA02 81.47 Methanopyrus kandleriPorphyrin and chlorophyll metabolismGlutamyl-tRNA reductase [EC:1.2.1.70]Glutamyl-tRNA reductaseMetabolic pathways 3.40.50.720 154 12 85 2.95 3.47
1f8fA02 81.46 Acinetobacter calcoaceticusBenzyl alcohol dehydrogenase 3.40.50.720 137 16 78 3.36 4.30
1lu9A02 81.40 Methylobacterium extorquens AM1Bifunctional protein mdtA 3.40.50.720 151 17 84 3.30 3.91
2eggA02 81.32 Shikimate 5-dehydrogenase [EC:1.1.1.25]Geobacillus kaustophilusPhenylalanine, tyrosine and tryptophan biosynthesisShikimate 5-dehydrogenaseMetabolic pathways 3.40.50.720 140 15 77 2.56 3.30
1qp8A02 81.14 Pyrobaculum aerophilum2-hydroxyacid dehydrogenase 3.40.50.720 179 14 74 3.03 4.05
1lluA02 81.14 Tyrosine metabolismFatty acid metabolism1- and 2-Methylnaphthalene degradationMetabolic pathwaysMetabolism of xenobiotics by cytochrome P450 3.40.50.720 138 11 80 2.97 3.71
1ml4A02 80.22 Pyrimidine metabolismAspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]Pyrococcus abyssiAspartate carbamoyltransferaseAlanine, aspartate and glutamate metabolism 3.40.50.1370 158 11 81 2.93 3.61
1piwA02 80.18 NADP-dependent alcohol dehydrogenase 6Alcohol dehydrogenase (NADP+) activityAlcohol metabolic processHydroxymethylfurfural reductase (NADH) activitySoluble fraction 3.40.50.720 137 11 80 3.37 4.21
1edzA01 80.00 One carbon pool by folateIdentical protein bindingMethylenetetrahydrofolate dehydrogenase (NAD+) [EC:1.5.1.15]Purine base biosynthetic processMethylenetetrahydrofolate dehydrogenase (NAD+) activity 3.40.50.720 156 10 76 2.89 3.79
1o89A02 79.93 Putative quinone oxidoreductase yhdHEscherichia coli K-12 3.40.50.720 167 15 83 4.08 4.90
1js1X02 79.91 N-acetylornithine carbamoyltransferaseBacteroides thetaiotaomicronN-succinyl-L-ornithine transcarbamylase [EC:2.1.3.11] 3.40.50.1370 152 6 79 3.49 4.40
1iz0A02 79.76 NADPH2:quinone reductase [EC:1.6.5.5]Probable quinone oxidoreductaseThermus thermophilus 3.40.50.720 152 12 75 2.73 3.61
3d6nB02 79.70 Pyrimidine metabolismAspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]Aspartate carbamoyltransferaseAlanine, aspartate and glutamate metabolismMetabolic pathways 3.40.50.1370 144 11 75 3.15 4.20
3grfA02 79.37 Arginine and proline metabolismGiardia intestinalisOrnithine carbamoyltransferaseOrnithine carbamoyltransferase [EC:2.1.3.3]Metabolic pathways 3.40.50.1370 165 7 78 3.22 4.12
1othA02 78.97 Arginine and proline metabolismHomo sapiensOrnithine carbamoyltransferase [EC:2.1.3.3]Metabolic pathwaysOrnithine carbamoyltransferase, mitochondrial 3.40.50.1370 159 9 80 3.41 4.23
3kznA02 78.91 N-acetylornithine carbamoyltransferaseXanthomonas campestris pv. campestrisN-acetylornithine carbamoyltransferase [EC:2.1.3.9] 3.40.50.1370 170 8 76 3.60 4.71
3ckyA01 78.66 Eubacterium barkeri2-hydroxymethyl glutarate dehydrogenase 3.40.50.720 163 10 73 3.37 4.58
1ur5C01 77.95 Malate dehydrogenase [EC:1.1.1.37]Citrate cycle (TCA cycle)Pyruvate metabolismChloroflexus aurantiacus J-10-flMetabolic pathways 3.40.50.720 136 11 67 2.62 3.88
1pqwA00 77.69 PHENOLPTHIOCEROL SYNTHESIS TYPE-I POLYKETIDE SYNTHASE PPSCPhenolpthiocerol synthesis type-I polyketide synthase CMycobacterium tuberculosis 3.40.50.720 183 8 75 3.48 4.58
1hyhA01 76.87 Weissella confusaL-2-hydroxyisocaproate dehydrogenase 3.40.50.720 141 9 66 2.87 4.33
1hyeA01 76.00 Malate dehydrogenase [EC:1.1.1.37]Citrate cycle (TCA cycle)Methanocaldococcus jannaschiiPyruvate metabolismMetabolic pathways 3.40.50.720 147 10 66 2.83 4.27
2x5oA01 75.64 D-Glutamine and D-glutamate metabolismPeptidoglycan biosynthesisMetabolic pathwaysUDP-N-acetylmuramoylalanine--D-glutamate ligaseUDP-N-acetylmuramoylalanine-D-glutamate ligase activity 3.40.50.720 92 15 52 2.38 4.53
1o6zA02 75.58 Malate dehydrogenase [EC:1.1.1.37]Citrate cycle (TCA cycle)Pyruvate metabolismHaloarcula marismortuiMetabolic pathways 3.40.50.720 142 11 66 3.28 4.95
2c82A01 75.43 Terpenoid backbone biosynthesisMetabolic pathways1-deoxy-D-xylulose 5-phosphate reductoisomerase1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]Mycobacterium tuberculosis 3.40.50.720 141 8 68 3.29 4.83
1duvG02 75.33 Arginine and proline metabolismMetabolic pathwaysOrnithine carbamoyltransferase activityOrnithine carbamoyltransferase [EC:2.1.3.3]Ornithine carbamoyltransferase chain I 3.40.50.1370 183 6 68 3.34 4.85
2rcyA01 75.31 Arginine and proline metabolismMetabolic pathwaysPlasmodium falciparum 3D7Pyrroline carboxylate reductasePyrroline-5-carboxylate reductase [EC:1.5.1.2] 3.40.50.720 148 6 65 3.22 4.91
3a06B01 74.97 Terpenoid backbone biosynthesisThermotoga maritima1-deoxy-D-xylulose 5-phosphate reductoisomerase1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]Metabolic pathways 3.40.50.720 141 13 66 3.16 4.73
1q0qA01 74.63 Terpenoid backbone biosynthesisMetabolic pathways1-deoxy-D-xylulose 5-phosphate reductoisomerase1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]1-deoxy-D-xylulose-5-phosphate reductoisomerase activity 3.40.50.720 150 6 66 2.99 4.51
1p3dA01 72.88 D-Glutamine and D-glutamate metabolismUDP-N-acetylmuramate--L-alanine ligaseUDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]Haemophilus influenzaePeptidoglycan biosynthesis 3.40.50.720 87 17 51 2.42 4.72
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Displaying entries 1 to 33 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1li4A02
YGCRESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGNIF
VTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYRLKNGRRIILLAEGRLVNLGCAMG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1li4A02
YGCRESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGNIF
VTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYRLKNGRRIILLAEGRLVNLGCAMG
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:09

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"