CATH Domain: 1lciA01 XML data for domain: 1lciA01

Molscript image for 1lciA01
1lciA01
PDB coordinates for domain 1lciA01

PDB 1lci, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.980 Gene3D
3.40.50.980.2
3.40.50.980.2.1
3.40.50.980.2.1.1
3.40.50.980.2.1.1.1
3.40.50.980.2.1.1.1.1

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Segment boundaries for domain 1lciA01

Chopping figure for domain 1lciA01
DomainStart PDB ResidueStop PDB Residue
1lciA01 56 213
1lciA02 214 355
1lciA03 359 435
1lciA04 441 544

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 3.40.50.980.2.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1mdbA01 83.63 2,3-dihydroxybenzoate-AMP ligase [EC:2.7.7.58]Bacillus subtilis2,3-dihydroxybenzoate-AMP ligaseBiosynthesis of siderophore group nonribosomal peptides 3.40.50.980 158 13 75 1.96 2.60
1t5hX01 82.78 4-chlorobenzoyl CoA ligaseAlcaligenes sp. AL3007 3.40.50.980 166 16 78 2.81 3.59
1lciA02 78.30 Photinus pyralisLuciferin 4-monooxygenasePeroxisome 3.40.50.980 142 8 74 3.43 4.60
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1lciA01
YFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQK
ILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSLPKGVALPHR
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1lciA01
YFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQK
ILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHR
BLAST against CATH

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Domain History Events (3)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1lci001" to "1lciA01" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Domain assigned by lewis on 18 Jan 2007 19:39

Reassigning this domain to its previous classification as part of fragment fixing process in preparation for release v3.1.0.

Insertion by lewis on 18 Jan 2007 19:39

Rechopping chains just before release v3.1.0 in order to fix missing fragments.