CATH Domain: 1lc5A01 XML data for domain: 1lc5A01

Molscript image for 1lc5A01
1lc5A01
PDB coordinates for domain 1lc5A01

PDB 1lc5, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.90 Alpha-Beta Complex
3.90.1150 Aspartate Aminotransferase, domain 1
3.90.1150.10 Aspartate Aminotransferase, domain 1 Gene3D
3.90.1150.10.5
3.90.1150.10.5.1
3.90.1150.10.5.1.1
3.90.1150.10.5.1.1.1
3.90.1150.10.5.1.1.1.1

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Segment boundaries for domain 1lc5A01

Chopping figure for domain 1lc5A01
DomainStart PDB ResidueStop PDB Residue
1lc5A01 8 37
1lc5A01 263 357
1lc5A02 38 262

Structural Neighbourhood (24 entries)

There are 24 matching structural neighberhood comparisons for CATH ID 3.90.1150.10.5.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 24 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3ftbA01 91.31 Tyrosine metabolismHistidinol-phosphate aminotransferase [EC:2.6.1.9]Histidine metabolismMetabolic pathwaysPhenylalanine metabolism 3.90.1150.10 112 35 85 1.34 1.57
3ffhA01 85.30 Tyrosine metabolismListeria innocuaHistidinol-phosphate aminotransferase [EC:2.6.1.9]Histidine metabolismPhenylalanine metabolism 3.90.1150.10 131 18 90 3.22 3.54
1uu2B01 84.81 Thermotoga maritimaTyrosine metabolismHistidinol-phosphate aminotransferase [EC:2.6.1.9]Histidine metabolismMetabolic pathways 3.90.1150.10 117 17 80 2.41 2.98
1uu1B01 84.72 Thermotoga maritimaTyrosine metabolismHistidinol-phosphate aminotransferase [EC:2.6.1.9]Histidine metabolismMetabolic pathways 3.90.1150.10 131 17 79 2.70 3.40
3dydA01 82.88 Tyrosine metabolismL-tyrosine:2-oxoglutarate aminotransferase activityMetabolic pathwaysPhenylalanine metabolismUbiquinone and other terpenoid-quinone biosynthesis 3.90.1150.10 137 16 83 3.21 3.86
1bs0A01 82.42 Biotin metabolismMetabolic pathways8-amino-7-oxononanoate synthase [EC:2.3.1.47]8-amino-7-oxononanoate synthase activityBiotin biosynthetic process 3.90.1150.10 132 18 88 3.34 3.77
1m32A01 81.95 2-aminoethylphosphonate--pyruvate transaminaseSalmonella enterica subsp. enterica serovar Typhimurium2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37]Phosphonate and phosphinate metabolismMetabolic pathways 3.90.1150.10 110 14 79 2.52 3.18
1fc4A02 81.90 Glycine, serine and threonine metabolismLigase activityMetal ion binding2-amino-3-ketobutyrate coenzyme A ligaseGlycine C-acetyltransferase [EC:2.3.1.29] 3.90.1150.10 133 12 84 3.47 4.08
1jg8A02 81.59 Thermotoga maritimaThreonine aldolase [EC:4.1.2.5]Glycine, serine and threonine metabolismMetabolic pathwaysL-allo-threonine aldolase 3.90.1150.10 96 12 68 1.86 2.74
1p3wA01 81.19 Thiamine metabolismCysteine desulfurase activitySelenocysteine lyase activityCysteine desulfuraseIron-sulfur cluster assembly 3.90.1150.10 121 9 81 2.79 3.42
2hoxA03 80.23 Alliin lyase 1Allium sativum 3.90.1150.10 113 15 76 3.10 4.08
1eg5B01 79.97 Thermotoga maritimaThiamine metabolismCysteine desulfurase [EC:2.8.1.7]Aminotransferase, class V 3.90.1150.10 106 11 72 3.20 4.44
1iugA01 79.96 Thermus thermophilusAspartate aminotransferase 3.90.1150.10 111 9 80 2.65 3.31
1w23A02 78.49 Phosphoserine aminotransferaseBacillus alcalophilus 3.90.1150.10 103 8 72 2.29 3.18
3b8xA02 78.46 Amino sugar and nucleotide sugar metabolismPutative pyridoxamine 5-phosphate-dependent dehydraseEscherichia coliCDP-6-deoxy-D-xylo-4-hexulose-3-dehydrase 3.90.1150.10 124 11 72 2.46 3.42
3k40A03 78.35 Aromatic-L-amino-acid decarboxylase activityDopamine biosynthetic process from tyrosineAromatic-L-amino-acid decarboxylaseDevelopmental pigmentationSerotonin biosynthetic process from tryptophan 3.90.1150.10 99 9 66 2.31 3.48
2qmaA02 78.22 Diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]Vibrio parahaemolyticusGlycine, serine and threonine metabolismDiaminobutyrate-pyruvate transaminase & L-2,4-diaminobutyrate decarboxylaseMetabolic pathways 3.90.1150.10 122 8 82 3.38 4.10
1mdoA02 78.16 Amino sugar and nucleotide sugar metabolismUDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferaseTwo-component systemSalmonella enterica subsp. enterica serovar TyphimuriumUDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.-] 3.90.1150.10 123 11 72 2.68 3.72
1b9hA02 77.65 Amycolatopsis mediterraneiRifK 3.90.1150.10 139 6 67 2.91 4.30
1c7nA01 77.56 Treponema denticolaHemolysin 3.90.1150.10 164 4 75 3.61 4.77
1svvB02 76.75 Leishmania major strain FriedlinThreonine aldolase [EC:4.1.2.5]Glycine, serine and threonine metabolismMetabolic pathwaysPutative uncharacterized protein 3.90.1150.10 88 12 67 2.95 4.39
1ukjA02 76.35 Methionine gamma-lyasePseudomonas putida 3.90.1150.10 134 8 65 2.64 4.02
1o69A02 75.85 Campylobacter jejuniAminotransferase homolog 3.90.1150.10 141 6 63 3.11 4.87
2fq6A02 73.89 Nitrogen metabolismSelenoamino acid metabolismSulfur metabolismMetabolic pathwaysCysteine and methionine metabolism 3.90.1150.10 137 8 66 3.04 4.58
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Displaying entries 1 to 24 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1lc5A01
HGGNIREPATVLGISPDQLLDFSANINPLGSAWQQATWHWLREEGARFYQALCQLPLLTVYPGRANYLLLRCEREDIDLQ
RRLLTQRILIRSCANYPGLDSRYYRVAIRSAAQNERLLAALRNVL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1lc5A01
HGGNIREPATVLGISPDQLLDFSANINPLGSAWQQATWHWLREEGARFYQALCQLPLLTVYPGRANYLLLRCEREDIDLQ
RRLLTQRILIRSCANYPGLDSRYYRVAIRSAAQNERLLAALRNVLTGIAPAD
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:36

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:36

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:08

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"