CATH Domain: 1l8nA01

1l8nA01

PDB 1l8n, Chain A, Domain 1

CATH Code	Level Description	Links
3	Alpha Beta
3.30	2-Layer Sandwich
3.30.379	Chitobiase; domain 2
3.30.379.10	Chitobiase, domain 2	Gene3D
3.30.379.10.2
3.30.379.10.2.1
3.30.379.10.2.1.1
3.30.379.10.2.1.1.1
3.30.379.10.2.1.1.1.1

Structure
Sequence
History

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Segment boundaries for domain 1l8nA01

Domain	Start PDB Residue	Stop PDB Residue
1l8nA01	16	140
1l8nA02	141	473
1l8nA03	474	678

What is a Structural Neighbour?

The term "structural neighbour" is used here to describe two CATH domains that share a degree of structural similarity. The SSAP algorithm is used to calculate this similarity and works by generating a structure-based pairwise alignment of the two domains then scoring this alignment using a RMSD score which has been normalised by the length of the larger domain divided by the number of aligned residues (SIMAX).

Structural Neighbourhood (1 entries)

There are 1 matching structural neighberhood comparisons for CATH ID 3.30.379.10.2.1.1.1.1 (SIMAX score < 5)

Match Depth	Match	SSAP score	Match Keywords	Match Superfamily	Length	Sequence Id	Overlap	RMSD	SIMAX
	1jakA02	81.38	B-N-acetylhexosaminidaseStreptomyces plicatus	3.30.379.10	141	17	75	3.09	4.11

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Domain ATOM Sequence

>pdb|1l8nA01
DQYSRLRFEEIVAKRTSPIFQAAVEELQKGLRSMMEIEPQVVQEVNETANSIWLGTLEDEEFERPLEGTLVHPEGYVIRS
DVDPFRIYIIGKTDAGVLYGVFHFLRLLQMGENIAQLSIIEQP

BLAST against CATH

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Domain COMBS Sequence

>pdb|1l8nA01
DQYSRLRFEEIVAKRTSPIFQAAVEELQKGLRSMMEIEPQVVQEVNETANSIWLGTLEDEEFERPLEGTLVHPEGYVIRS
DVDDGPFRIYIIGKTDAGVLYGVFHFLRLLQMGENIAQLSIIEQP

BLAST against CATH

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Domain History Events (13)

Domain assigned by auto on 11 Mar 2009 21:17

Assigning to "3.30.379.10" based on similarity with "1k9dA01"

Flow stage update by auto on 11 Mar 2009 21:15

No in_process hits for Domain "1l8nA01" ready to be processed

Update comment by auto on 11 Mar 2009 21:12

Domain "1l8nA01" hits Domain "1k9dA01" (100% over 100%) which is currently in process