CATH Domain: 1l8dA00 XML data for domain: 1l8dA00

Molscript image for 1l8dA00
1l8dA00
PDB coordinates for domain 1l8dA00

PDB 1l8d, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.287 Helix Hairpins
1.10.287.510 Helix hairpin bin Gene3D
1.10.287.510.1
1.10.287.510.1.1
1.10.287.510.1.1.1
1.10.287.510.1.1.1.1
1.10.287.510.1.1.1.1.1

[top]
Segment boundaries for domain 1l8dA00

Chopping figure for domain 1l8dA00
DomainStart PDB ResidueStop PDB Residue
1l8dA00 396 498

Structural Neighbourhood (16 entries)

There are 16 matching structural neighberhood comparisons for CATH ID 1.10.287.510.1.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 16 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3fx7A00 84.00 Helicobacter pyloriPutative uncharacterized protein 1.10.287.850 83 10 74 2.36 3.16
1fpoC02 82.47 Co-chaperone protein hscBMolecular chaperone HscBEscherichia coli K-12 1.20.1280.20 91 8 59 1.91 3.23
1nt2B02 82.09 Archaeoglobus fulgidusProtein bindingPutative uncharacterized protein 1.10.287.660 67 11 65 2.68 4.12
3csxB00 81.60 Cyanothece sp. ATCC 51142DUF683-containing protein 1.10.287.660 71 9 68 2.94 4.27
3csxA00 81.09 Cyanothece sp. ATCC 51142DUF683-containing protein 1.10.287.660 61 11 59 1.97 3.33
3bz1Z00 80.86 PhotosynthesisThermosynechococcus elongatus BP-1Photosystem II reaction center protein ZPhotosystem II PsbZ proteinMetabolic pathways 1.10.287.740 62 4 60 1.71 2.84
1wr6A00 80.86 ADP-ribosylation factor-binding protein GGA3ADP-ribosylation factor bindingHomo sapiensTrans-Golgi network 1.20.58.160 88 10 56 2.04 3.62
1bsmA01 80.35 Superoxide dismutase [Mn/Fe]Propionibacterium freudenreichii subsp. shermanii 1.10.287.990 64 6 61 1.88 3.07
1i4dA00 78.81 Cellular component movementRuffleGTP-dependent protein bindingGTP bindingPlasma membrane 1.20.1270.60 188 11 52 2.54 4.87
2fb5A01 78.12 Bacillus cereus ATCC 14579Hypothetical Membrane Spanning Protein 1.10.287.770 72 6 67 2.90 4.27
1gs9A00 78.09 CGMP-mediated signalingChylomicronNegative regulation of cholesterol biosynthetic processNitric oxide mediated signal transductionAlzheimer's disease 1.20.120.20 144 6 54 2.53 4.61
2p5oA04 76.99 DNA polymeraseEnterobacteria phage RB69 1.10.287.690 55 10 53 1.88 3.52
2oyqA04 76.96 DNA polymeraseEnterobacteria phage RB69 1.10.287.690 49 10 47 1.78 3.74
1ci6B00 76.87 Mammary gland epithelial cell differentiationMammary gland epithelial cell proliferationCytoplasmProtein heterodimerization activitySequence-specific enhancer binding RNA polymerase II transcription factor activity 1.20.5.170 47 8 42 0.91 2.13
1g6uA00 76.10 1.10.287.540 47 17 45 1.73 3.79
1czqA00 72.06 1.20.5.170 45 6 35 1.57 4.37
[1]
Displaying entries 1 to 16 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1l8dA00
KKLLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLA
KLIDRKSELERELRRIDMEIKRL
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1l8dA00
MKKLLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTL
AKLIDRKSELERELRRIDMEIKRLTPLLTVAE
BLAST against CATH

[top]
Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:33

HomCheck 'Assigned T' domains

Flow stage update by sillitoe on 06 Mar 2006 15:33

HomCheck 'Assigned T' domains

Insertion by auto on 05 Mar 2006 16:03

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"