CATH Domain: 1l7mB01 XML data for domain: 1l7mB01

Molscript image for 1l7mB01
1l7mB01
PDB coordinates for domain 1l7mB01

PDB 1l7m, Chain B, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.1000 Gene3D
3.40.50.1000.11
3.40.50.1000.11.1
3.40.50.1000.11.1.1
3.40.50.1000.11.1.1.1
3.40.50.1000.11.1.1.1.1

Segment boundaries for domain 1l7mB01

Chopping figure for domain 1l7mB01
DomainStart PDB ResidueStop PDB Residue
1l7mB01 502 516
1l7mB01 578 710
1l7mB02 517 577

Structural Neighbourhood (36 entries)

There are 36 matching structural neighberhood comparisons for CATH ID 3.40.50.1000.11.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 36 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1wpgA04 86.76 Calcium ion bindingATP catabolic processER-Golgi intermediate compartmentCalcium-transporting ATPase activitySarcoplasmic/endoplasmic reticulum calcium ATPase 1 3.40.50.1000 156 19 76 1.71 2.22
3fvvA01 86.30 Bordetella pertussisPutative uncharacterized protein 3.40.50.1000 148 23 92 3.20 3.46
2hszA01 85.79 Phosphoglycolate phosphatase [EC:3.1.3.18]Haemophilus somnus 129PTMetabolic pathwaysGlyoxylate and dicarboxylate metabolismPhosphoglycolate phosphatase 3.40.50.1000 148 22 87 2.55 2.90
2ah5A01 84.92 Glyoxylate and dicarboxylate metabolismMetabolic pathwaysPhosphoglycolate phosphatase [EC:3.1.3.18]Hydrolase, haloacid dehalogenase-like familyStreptococcus pneumoniae 3.40.50.1000 142 17 86 2.69 3.11
3d6jA01 84.59 Phosphoglycolate phosphatase [EC:3.1.3.18]Putative haloacid dehalogenase-like hydrolaseBacteroides fragilis NCTC 9343Glyoxylate and dicarboxylate metabolismMetabolic pathways 3.40.50.1000 137 16 82 2.55 3.10
2hi0A01 84.49 Putative phosphoglycolate phosphatasePhosphoglycolate phosphatase [EC:3.1.3.18]Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842Metabolic pathwaysGlyoxylate and dicarboxylate metabolism 3.40.50.1000 146 22 86 2.75 3.18
2nyvA01 84.14 Phosphoglycolate phosphatase [EC:3.1.3.18]Glyoxylate and dicarboxylate metabolismMetabolic pathwaysAquifex aeolicusPhosphoglycolate phosphatase 3.40.50.1000 151 19 85 2.96 3.46
1k1eD00 84.00 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]Haemophilus influenzaeLipopolysaccharide biosynthesisMetabolic pathways 3.40.50.1000 170 22 75 2.45 3.25
1te2A01 83.22 Fructose and mannose metabolismMetabolic pathwaysRiboflavin metabolismThiamine metabolismMetal ion binding 3.40.50.1000 141 19 87 3.02 3.47
2fdrA01 82.81 Agrobacterium tumefaciens str. C58Putative uncharacterized protein 3.40.50.1000 150 16 84 2.93 3.46
3e58B01 82.76 Streptococcus thermophilus LMG 18311Beta-phosphoglucomutase, putative 3.40.50.1000 136 13 80 2.97 3.67
2hdoA01 82.51 Phosphoglycolate phosphatase [EC:3.1.3.18]Lactobacillus plantarumMetabolic pathwaysGlyoxylate and dicarboxylate metabolismPhosphoglycolate phosphatase (Putative) 3.40.50.1000 134 12 85 2.95 3.47
2fi1A01 82.44 Hydrolase, haloacid dehalogenase-like familyStreptococcus pneumoniae 3.40.50.1000 123 17 76 2.75 3.58
3ed5A01 81.99 Putative HAD-hydrolase yfnBBacillus subtilis2-haloacid dehalogenase [EC:3.8.1.2]1,2-Dichloroethane degradationGamma-Hexachlorocyclohexane degradation 3.40.50.1000 140 17 84 2.99 3.54
1zjjB01 81.93 4-nitrophenyl phosphatase [EC:3.1.3.41]Pyrococcus horikoshiiGamma-Hexachlorocyclohexane degradationPutative uncharacterized protein PH1952 3.40.50.1000 146 17 81 2.96 3.63
2p11A01 81.72 Burkholderia xenovorans LB400Putative uncharacterized protein 3.40.50.1000 140 13 79 2.91 3.66
2hcfA01 81.54 Chlorobaculum tepidumHydrolase, haloacid dehalogenase-like family 3.40.50.1000 156 19 83 2.66 3.17
1rkuA01 81.50 Glycine, serine and threonine metabolismMetabolic pathwaysPhosphoserine / homoserine phosphotransferase [EC:3.1.3.3 2.7.1.39]Pseudomonas aeruginosaHomoserine kinase 3.40.50.1000 111 18 66 2.09 3.13
2b0cA01 81.34 Phosphatase yihXGlucose-1-phosphatase activityPutative hydrolase of the HAD superfamilyEscherichia coli K-12 3.40.50.1000 133 15 80 2.85 3.55
1u7pD00 80.93 Mus musculusMagnesium-dependent phosphatase 1 3.40.50.1000 161 14 70 2.79 3.94
2pkeA01 80.91 Xanthomonas campestris pv. campestrisPutative hydrolase of the HAD superfamilyHydrolase, haloacid delahogenase-like family 3.40.50.1000 152 14 78 3.26 4.16
3b8cA03 80.76 Oxidative phosphorylationArabidopsis thalianaPlasma membraneATPase 2, plasma membrane-typeProtein binding 3.40.50.1000 163 23 74 2.26 3.02
1swvA01 80.62 Bacillus cereusPhosphonoacetaldehyde hydrolase 3.40.50.1000 178 17 72 2.71 3.74
3dv9A01 80.56 Bacteroides vulgatus ATCC 8482Putative beta-phosphoglucomutase 3.40.50.1000 160 14 79 3.63 4.57
2pr7A00 80.50 Corynebacterium glutamicumHaloacid dehalogenase/epoxide hydrolase family 3.40.50.1000 131 12 78 3.11 3.98
3i28A01 80.35 PeroxisomeSoluble epoxide hydrolase [EC:3.3.2.10]Arachidonic acid metabolismEpoxide hydrolase activityEpoxide hydrolase 2 3.40.50.1000 135 16 78 3.08 3.94
2ho4B01 79.39 Mus musculusHaloacid dehalogenase-like hydrolase domain-containing protein 2 3.40.50.1000 159 15 77 3.39 4.35
2oycA01 79.03 Vitamin B6 metabolismPyridoxal phosphate phosphataseHomo sapiensPyridoxal phosphatase [EC:3.1.3.74]Metabolic pathways 3.40.50.1000 167 17 73 3.49 4.78
2qltA01 78.40 Response to osmotic stressNucleusProtein bindingMetabolic pathwaysCytoplasm 3.40.50.1000 171 16 76 3.80 5.00
1ltqA02 78.33 Polynucleotide kinaseEnterobacteria phage T4 3.40.50.1000 136 16 70 3.02 4.27
3bwvA01 78.28 Putative 5'(3')-deoxyribonucleotidaseStaphylococcus epidermidis ATCC 12228 3.40.50.1000 121 15 71 2.51 3.51
1cqzA01 77.38 PeroxisomeMus musculusSoluble epoxide hydrolase [EC:3.3.2.10]Arachidonic acid metabolismEpoxide hydrolase 2 3.40.50.1000 162 11 71 3.31 4.62
2i6xA01 76.98 Hydrolase, haloacid dehalogenase-like familyPutative hydrolase of the HAD superfamilyPorphyromonas gingivalis 3.40.50.1000 127 12 78 3.19 4.08
1pswA01 74.82 Lipopolysaccharide biosynthesisMetabolic pathwaysADP-heptose--LPS heptosyltransferase 2Heptosyltransferase II [EC:2.4.-.-]Escherichia coli K-12 3.40.50.2000 134 5 73 3.46 4.71
1kjnA00 74.81 Methanothermobacter thermautotrophicus str. Delta HConserved protein 3.40.50.10160 148 11 75 3.59 4.74
3cnhA01 73.51 Hydrolase family proteinPutative hydrolase of the HAD superfamilyDeinococcus radiodurans 3.40.50.1000 114 11 72 3.22 4.47
Displaying entries 1 to 36 (page 1 of 1)


Domain ATOM Sequence

>pdb|1l7mB01
EKKKKLILFDFDSTLTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGLDYAFANRLIVKDGKLTGDVEGEVLKEN
AKGEILEKIAKIEGINLEDTVAVGDGANDISFKKAGLKIAFCAKPILKEKADICIEKRDLREILKYI    

Domain COMBS Sequence

>pdb|1l7mB01
XEKKKKLILFDFDSTLTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGLDYAFANRLIVKDGKLTGDVEGEVLKE
NAKGEILEKIAKIEGINLEDTVAVGDGANDISXFKKAGLKIAFCAKPILKEKADICIEKRDLREILKYI    

Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:18

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:18

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:08

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"