CATH Domain: 1l5pA00 XML data for domain: 1l5pA00

Molscript image for 1l5pA00
1l5pA00
PDB coordinates for domain 1l5pA00

PDB 1l5p, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.20 Ubiquitin-like (UB roll)
3.10.20.30 Gene3D
3.10.20.30.15
3.10.20.30.15.1
3.10.20.30.15.1.1
3.10.20.30.15.1.1.1
3.10.20.30.15.1.1.1.1

[top]
Segment boundaries for domain 1l5pA00

Chopping figure for domain 1l5pA00
DomainStart PDB ResidueStop PDB Residue
1l5pA00 1 93

Structural Neighbourhood (18 entries)

There are 18 matching structural neighberhood comparisons for CATH ID 3.10.20.30.15.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 18 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2gbjB00 78.24 3.10.20.90 84 11 67 3.05 4.50
1z2mA01 77.92 RIG-I-like receptor signaling pathwayInterferon-induced 17 kDa proteinISG15-protein conjugationHomo sapiensUbiquitin cross-reactive protein 3.10.20.90 75 13 69 3.17 4.54
1yqbA01 77.41 Ubiquilin-3Homo sapiensUbiquilin 3.10.20.90 71 14 67 3.19 4.71
1wywB00 77.20 Nuclear poreNegative regulation of transcriptionSmall ubiquitin-related modifier 1Protein bindingProtein sumoylation 3.10.20.90 79 7 67 3.06 4.52
2zeqA00 77.05 Synaptic transmission, glutamatergicLearningAdult locomotory behaviorParkinson's diseaseDopamine metabolic process 3.10.20.90 78 5 67 2.92 4.31
2bwfA00 76.99 Ubiquitin domain-containing protein DSK2Protein binding, bridgingSpindle pole body duplication in nuclear envelopeSaccharomyces cerevisiaeER-associated protein catabolic process 3.10.20.90 77 10 68 3.32 4.82
1ryjA00 76.84 Methanothermobacter thermautotrophicus str. Delta HPutative uncharacterized protein 3.10.20.30 70 15 63 2.92 4.60
1y8rC00 76.55 Nuclear poreNegative regulation of transcriptionSmall ubiquitin-related modifier 1Protein sumoylationProtein binding 3.10.20.90 84 5 67 3.08 4.55
1wh3A01 76.35 CytoplasmDNA binding59 kDa 2'-5'-oligoadenylate synthase-like proteinThyroid hormone receptor bindingNucleolus 3.10.20.90 71 7 67 3.38 4.99
1wx9A00 76.18 Large proline-rich protein BAT3Homo sapiensProtein binding 3.10.20.90 86 5 67 2.72 4.02
2kd0A01 76.06 LRR repeats and ubiquitin-like domain-containing protein At2g30105Arabidopsis thaliana 3.10.20.90 71 15 67 3.11 4.59
1wgdA00 75.88 Endoplasmic reticulum membraneHomo sapiensHomocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 proteinProtein binding 3.10.20.90 93 8 69 3.33 4.76
1z2mA02 75.68 RIG-I-like receptor signaling pathwayInterferon-induced 17 kDa proteinISG15-protein conjugationHomo sapiensUbiquitin cross-reactive protein 3.10.20.90 77 7 68 3.32 4.82
1zud400 75.19 Sulfur carrier protein ThiSThiamine biosynthesis ThiSEscherichia coli K-12 3.10.20.30 66 10 60 2.79 4.63
1uh6A00 74.86 Mus musculusUbiquitin-like protein 5Ubiquitin-like protein 5 3.10.20.90 100 13 63 2.76 4.38
1v5oA00 74.66 Mus musculusDNA damage-inducible protein 1Protein DDI1 homolog 1 3.10.20.90 102 12 62 3.10 4.94
1wxsA00 74.30 CytoplasmUbiquitin-fold modifier 1NucleusProtein ufmylationHomo sapiens 3.10.20.90 88 10 67 3.15 4.65
1j8cA00 74.09 CytoplasmPlasma membraneHomo sapiensUbiquilinUbiquilin-2 3.10.20.90 103 8 61 2.74 4.48
[1]
Displaying entries 1 to 18 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1l5pA00
GTITAVKGGVKKQLKFEDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHVSGKVAAAEDDEKEFLEDQPANARLACAI
TLSGENDGAVFEL
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1l5pA00
GTITAVKGGVKKQLKFEDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHVSGKVAAAEDDEKEFLEDQPANARLACAI
TLSGENDGAVFEL
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:50

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:50

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:12

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"