CATH Domain: 1l5jA05

1l5jA05

PDB 1l5j, Chain A, Domain 5

CATH Code	Level Description	Links
3	Alpha Beta
3.30	2-Layer Sandwich
3.30.499	Aconitase; domain 3
3.30.499.10	Aconitase, domain 3	Gene3D
3.30.499.10.3
3.30.499.10.3.1
3.30.499.10.3.1.1
3.30.499.10.3.1.1.1
3.30.499.10.3.1.1.1.1

Structure
Sequence
History

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Segment boundaries for domain 1l5jA05

Domain	Start PDB Residue	Stop PDB Residue
1l5jA01	1	161
1l5jA02	162	361
1l5jA03	382	401
1l5jA03	530	682
1l5jA04	402	529
1l5jA05	683	862

What is a Structural Neighbour?

The term "structural neighbour" is used here to describe two CATH domains that share a degree of structural similarity. The SSAP algorithm is used to calculate this similarity and works by generating a structure-based pairwise alignment of the two domains then scoring this alignment using a RMSD score which has been normalised by the length of the larger domain divided by the number of aligned residues (SIMAX).

Structural Neighbourhood (0 entries)

Sorry, we could not find any non-redundant representatives with similar structural scores to this domain in CATH.

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Domain ATOM Sequence

>pdb|1l5jA05
CAPNDPDDARPLSAVQGEKIDEVFIGSCMTNIGHFRAAGKLLDAHKGQLPTRLWVAPPTRMDAAQLTEEGYYSVFGKSGA
RIEIPGCSLCMGNQARVADGATVVSTSTRNFPNRLGTGANVFLASAELAAVAALIGKLPTPEEYQTYVAQVDKTAVDTYR
YLNFNQLSQYTEKADGVIFQ

BLAST against CATH

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Domain COMBS Sequence

>pdb|1l5jA05
CAPNDPDDARPLSAVQGEKIDEVFIGSCMTNIGHFRAAGKLLDAHKGQLPTRLWVAPPTRMDAAQLTEEGYYSVFGKSGA
RIEIPGCSLCMGNQARVADGATVVSTSTRNFPNRLGTGANVFLASAELAAVAALIGKLPTPEEYQTYVAQVDKTAVDTYR
YLNFNQLSQYTEKADGVIFQTAV

BLAST against CATH

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Domain History Events (11)

Domain assigned by auto on 11 Mar 2009 21:11

Assigning to "3.30.499.10" based on similarity with "1l5jB05"