CATH Domain: 1l3kA02 XML data for domain: 1l3kA02

Molscript image for 1l3kA02
1l3kA02
PDB coordinates for domain 1l3kA02

PDB 1l3k, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.70 Alpha-Beta Plaits
3.30.70.330 Gene3D
3.30.70.330.2
3.30.70.330.2.1
3.30.70.330.2.1.1
3.30.70.330.2.1.1.1
3.30.70.330.2.1.1.1.1

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Segment boundaries for domain 1l3kA02

Chopping figure for domain 1l3kA02
DomainStart PDB ResidueStop PDB Residue
1l3kA01 8 91
1l3kA02 103 180

Structural Neighbourhood (60 entries)

There are 60 matching structural neighberhood comparisons for CATH ID 3.30.70.330.2.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 60 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1cvjA01 92.00 Poly(A) RNA bindingTranslation activator activityProtein C-terminus bindingMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 77 19 97 1.52 1.56
1fxlA02 90.75 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 77 23 94 1.93 2.03
2do0A01 90.51 Protein domain specific bindingIntegral to plasma membraneParaspecklesAlternative nuclear mRNA splicing, via spliceosomeHeterogeneous nuclear ribonucleoprotein M 3.30.70.330 76 19 96 1.67 1.74
1h2vZ00 89.98 SpliceosomeMRNA cappingMRNA cap binding complexNuclear-transcribed mRNA catabolic process, nonsense-mediated decayNuclear cap-binding protein subunit 2 3.30.70.330 92 16 84 1.44 1.70
1x5uA01 89.56 SpliceosomeSpliceosomal complexHomo sapiensSplicing factor 3B subunit 4Splicing factor 3B subunit 4 3.30.70.330 80 26 97 2.08 2.13
1rk8A00 89.27 SpliceosomeRNA-binding protein 8AMicrotubule cytoskeleton organizationNucleusDrosophila melanogaster 3.30.70.330 87 24 89 2.25 2.51
2dgsA01 89.15 CytoplasmDAZ-associated protein 1NucleusRNA bindingHomo sapiens 3.30.70.330 89 38 87 1.74 1.99
1x5oA01 89.01 RNA processingHomo sapiensProtein bindingRNA-binding motif, single-stranded-interacting protein 1 3.30.70.330 86 12 89 1.75 1.95
1fxlA01 88.93 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 71 18 89 2.11 2.35
2qfjA02 88.76 Homo sapiensPoly(U)-binding-splicing factor PUF60Protein binding 3.30.70.330 87 24 87 1.82 2.08
2vooA02 88.49 TRNA modificationNucleolusMRNA bindingProtein bindingLupus La protein 3.30.70.330 89 16 86 1.72 1.99
3feyB00 87.98 SpliceosomeMRNA cappingMRNA cap binding complexNuclear cap-binding protein subunit 2Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 3.30.70.330 97 16 76 1.50 1.97
1cvjG02 87.98 Poly(A) RNA bindingProtein C-terminus bindingTranslation activator activityMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 88 19 86 1.90 2.20
2pehA01 87.89 Splicing factor 45SpliceosomeHomo sapiensProtein bindingSplicing factor 45 3.30.70.330 83 16 92 3.82 4.12
1nu4A00 87.49 U1 small nuclear ribonucleoprotein ASpliceosomeSpliceosomal complexHomo sapiensProtein binding 3.30.70.330 91 20 82 2.03 2.46
1oiaA00 87.46 U1 small nuclear ribonucleoprotein ASpliceosomeSpliceosomal complexHomo sapiensProtein binding 3.30.70.330 90 20 83 2.00 2.40
2x1fA00 87.08 Protein heterodimerization activityMRNA 3'-end-processing protein RNA15MRNA polyadenylationSaccharomyces cerevisiaeMRNA cleavage 3.30.70.330 94 20 82 2.55 3.07
2hzcA00 85.87 Splicing factor U2AF 65 kDa subunitSpliceosomeSpliceosomal complexSplicing factor U2AF 65 kDa subunitEnzyme binding 3.30.70.330 87 17 82 2.19 2.65
1no8A00 85.74 THO complex subunit 4Mus musculusSpliceosomeSingle-stranded DNA bindingRNA binding 3.30.70.330 78 16 96 2.63 2.74
1sjqA00 85.71 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 88 11 81 1.93 2.36
1fjeB02 85.51 NucleolinMesocricetus auratus 3.30.70.330 84 15 86 2.31 2.66
2errA01 85.17 Fox-1 homolog AProtein C-terminus bindingHomo sapiensTrans-Golgi network 3.30.70.330 83 30 91 2.79 3.05
1d8zA00 85.17 Mus musculusAU-rich element bindingELAV like protein 2/3/4ELAV-like protein 3 3.30.70.330 89 19 87 2.89 3.30
2u2fA00 85.06 Splicing factor U2AF 65 kDa subunitSpliceosomeSpliceosomal complexSplicing factor U2AF 65 kDa subunitEnzyme binding 3.30.70.330 85 17 90 3.34 3.69
2jwnA01 84.87 CytoplasmPoly(A) RNA bindingXenopus laevisEmbryonic polyadenylate-binding protein 2-B 3.30.70.330 100 25 78 2.90 3.72
3sxlA02 84.52 Sex differentiationDrosophila melanogasterProtein complexPoly-pyrimidine tract bindingImaginal disc growth 3.30.70.330 55 25 66 1.38 2.07
1jmtA00 83.70 Spliceosomal complexSplicing factor U2AF 35 kDa subunitCajal bodyHomo sapiensProtein binding 3.30.70.330 98 19 77 2.43 3.13
1fjeB01 83.67 NucleolinMesocricetus auratus 3.30.70.330 81 16 88 2.68 3.02
1hl6C00 83.46 SpliceosomeRNA-binding protein 8AMicrotubule cytoskeleton organizationNucleusDrosophila melanogaster 3.30.70.330 111 20 65 2.18 3.31
1ufwA00 83.17 Phosphatidylinositol signaling systemSynaptojanin-2Phosphatidylinositol-bisphosphatase [EC:3.1.3.36]Homo sapiensInositol phosphate metabolism 3.30.70.330 95 20 72 2.45 3.37
1uw4A00 82.66 Regulator of nonsense transcripts 3BNuclear-transcribed mRNA catabolic process, nonsense-mediated decayHomo sapiensProtein binding 3.30.70.330 90 11 85 3.50 4.09
2u1aA00 81.41 U1 small nuclear ribonucleoprotein ASpliceosomeSpliceosomal complexHomo sapiensProtein binding 3.30.70.330 88 16 82 3.70 4.46
1sjrA00 81.09 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 108 10 68 2.48 3.62
1cvjH02 80.92 Poly(A) RNA bindingProtein C-terminus bindingMRNA polyadenylationTranslation activator activityPolyadenylate-binding protein 1 3.30.70.330 52 23 55 1.65 2.99
1whvA00 80.43 Mus musculusPoly(A)-specific ribonuclease PARN 3.30.70.330 100 11 66 2.22 3.36
1sxlA00 80.29 Sex differentiationDrosophila melanogasterProtein complexPoly-pyrimidine tract bindingNegative regulation of translation 3.30.70.330 97 23 79 3.51 4.42
1vq8S00 79.74 Large subunit ribosomal protein L23Ribosome50S ribosomal protein L23PHaloarcula marismortui 3.30.70.330 81 8 74 3.38 4.56
1in0A01 79.40 Hypothetical proteinHaemophilus influenzaeUPF0234 protein HI_1034 3.30.70.860 70 8 84 3.21 3.79
2nzcA00 79.11 Thermotoga maritimaPutative uncharacterized protein 3.30.70.1150 77 5 92 4.23 4.58
1konA03 78.50 UPF0082 protein yebCEscherichia coli K-12 3.30.70.980 75 6 79 3.40 4.28
1mw7A03 78.39 Helicobacter pyloriUPF0082 protein HP_0162 3.30.70.980 75 8 82 3.87 4.72
2bopA00 78.14 Regulatory protein E2Bovine papillomavirus type 1 3.30.70.330 85 5 84 3.62 4.27
1vr6A01 77.70 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysThermotoga maritima3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]Phospho-2-dehydro-3-deoxyheptonate aldolase 3.30.70.1140 75 12 80 3.71 4.59
1q5yD00 77.23 CopG family transcriptional regulator, nickel-responsive regulatorNickel-responsive regulatorProtein bindingEscherichia coli K-12 3.30.70.1150 80 3 83 4.16 4.97
2od4B01 76.84 3.30.70.900 81 6 85 4.20 4.93
2w25A02 76.51 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory proteinLeucine-responsive regulatory proteinMycobacterium tuberculosis 3.30.70.920 81 7 79 3.73 4.72
1qm9A01 76.36 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 98 12 73 3.30 4.49
1i1gA02 76.28 Pyrococcus furiosusHTH-type transcriptional regulator lrpALrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA 3.30.70.920 77 12 84 3.89 4.60
2zu1A02 76.26 Genome polyproteinCoxsackievirus B3 (strain Nancy) 2.40.10.10 69 2 62 3.14 5.00
1wj9A01 76.21 Thermus thermophilus HB8Putative uncharacterized protein TTHB192 3.30.70.1200 87 5 77 3.78 4.91
2hiyB01 75.91 Streptococcus pneumoniaePutative uncharacterized protein 3.30.70.1280 87 10 71 3.34 4.69
1u6fA00 75.89 Trypanosoma cruziRNA-binding protein UBP1 3.30.70.330 139 28 56 2.38 4.24
1utaA00 75.50 Membrane fractionCell cycle cytokinesisCell division protein FtsNCell division protein ftsNProtein binding 3.30.70.1070 77 7 84 3.72 4.40
1jqgA01 75.48 Carboxypeptidase AHelicoverpa armigera 3.30.70.340 91 5 71 3.37 4.72
1kohA01 75.43 Nuclear RNA export factor 1Homo sapiensProtein binding 3.30.70.330 97 7 72 3.58 4.96
1rwuA00 75.20 Hypothetical proteinUPF0250 protein ybeDEscherichia coli K-12 3.30.70.1460 87 6 85 4.10 4.82
1kn6A00 74.52 Mus musculusPeptide hormone processingSerine-type endopeptidase activityNeuroendocrine convertase 1Proprotein convertase subtilisin/kexin type 1 [EC:3.4.21.93] 3.30.70.850 73 5 84 4.20 4.96
1owxA00 74.29 TRNA modificationNucleolusMRNA bindingProtein bindingLupus La protein 3.30.70.330 113 11 63 2.72 4.27
1m1hA01 73.97 Transcriptional antiterminator NusGTranscription antitermination protein nusGAquifex aeolicus 3.30.70.940 100 5 68 3.26 4.79
1fo1A01 73.32 Nuclear RNA export factor 1Homo sapiensProtein binding 3.30.70.330 55 3 66 3.04 4.56
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Displaying entries 1 to 60 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1l3kA02
TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1l3kA02
TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
BLAST against CATH

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Domain History Events (2)

Insertion by lewis on 18 Jan 2007 19:38

Rechopping chains just before release v3.1.0 in order to fix missing fragments.

Domain assigned by lewis on 18 Jan 2007 19:38

Reassigning this domain to its previous classification as part of fragment fixing process in preparation for release v3.1.0.