CATH Domain: 1l3kA01 XML data for domain: 1l3kA01

Molscript image for 1l3kA01
1l3kA01
PDB coordinates for domain 1l3kA01

PDB 1l3k, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.70 Alpha-Beta Plaits
3.30.70.330 Gene3D
3.30.70.330.1
3.30.70.330.1.1
3.30.70.330.1.1.1
3.30.70.330.1.1.1.1
3.30.70.330.1.1.1.1.1

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Segment boundaries for domain 1l3kA01

Chopping figure for domain 1l3kA01
DomainStart PDB ResidueStop PDB Residue
1l3kA01 8 91
1l3kA02 103 180

Structural Neighbourhood (54 entries)

There are 54 matching structural neighberhood comparisons for CATH ID 3.30.70.330.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 54 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1cvjA01 91.38 Poly(A) RNA bindingTranslation activator activityProtein C-terminus bindingMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 77 23 90 1.07 1.18
1l3kA02 91.28 Heterogeneous nuclear ribonucleoprotein A1NucleolusProtein bindingCytoplasmSpliceosome 3.30.70.330 78 33 92 1.71 1.84
2qfjA02 90.98 Homo sapiensPoly(U)-binding-splicing factor PUF60Protein binding 3.30.70.330 87 20 89 1.50 1.67
1fxlA02 90.91 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 77 27 88 1.45 1.65
2do0A01 90.30 Protein domain specific bindingIntegral to plasma membraneParaspecklesAlternative nuclear mRNA splicing, via spliceosomeHeterogeneous nuclear ribonucleoprotein M 3.30.70.330 76 21 89 1.56 1.75
1h2vZ00 90.27 SpliceosomeMRNA cappingMRNA cap binding complexNuclear-transcribed mRNA catabolic process, nonsense-mediated decayNuclear cap-binding protein subunit 2 3.30.70.330 92 26 91 3.04 3.33
1rk8A00 90.14 SpliceosomeRNA-binding protein 8AMicrotubule cytoskeleton organizationNucleusDrosophila melanogaster 3.30.70.330 87 19 96 2.56 2.65
1cvjG02 90.13 Poly(A) RNA bindingProtein C-terminus bindingTranslation activator activityMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 88 25 93 1.99 2.14
1fxlA01 90.04 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 71 28 83 1.57 1.88
1x5uA01 89.65 SpliceosomeSpliceosomal complexHomo sapiensSplicing factor 3B subunit 4Splicing factor 3B subunit 4 3.30.70.330 80 25 94 1.71 1.82
1x5oA01 89.40 RNA processingHomo sapiensProtein bindingRNA-binding motif, single-stranded-interacting protein 1 3.30.70.330 86 17 89 1.58 1.76
2dgsA01 89.09 CytoplasmDAZ-associated protein 1NucleusRNA bindingHomo sapiens 3.30.70.330 89 34 94 2.39 2.53
2vooA02 88.90 TRNA modificationNucleolusMRNA bindingProtein bindingLupus La protein 3.30.70.330 89 16 93 2.25 2.41
2x1fA00 88.16 Protein heterodimerization activityMRNA 3'-end-processing protein RNA15MRNA polyadenylationSaccharomyces cerevisiaeMRNA cleavage 3.30.70.330 94 19 85 2.05 2.41
3feyB00 88.02 SpliceosomeMRNA cappingMRNA cap binding complexNuclear cap-binding protein subunit 2Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 3.30.70.330 97 25 82 3.02 3.66
2hzcA00 87.88 Splicing factor U2AF 65 kDa subunitSpliceosomeSpliceosomal complexSplicing factor U2AF 65 kDa subunitEnzyme binding 3.30.70.330 87 17 87 1.95 2.23
1nu4A00 87.41 U1 small nuclear ribonucleoprotein ASpliceosomeSpliceosomal complexHomo sapiensProtein binding 3.30.70.330 91 19 85 2.59 3.02
1d8zA00 87.30 Mus musculusAU-rich element bindingELAV like protein 2/3/4ELAV-like protein 3 3.30.70.330 89 25 92 2.65 2.88
1oiaA00 87.12 U1 small nuclear ribonucleoprotein ASpliceosomeSpliceosomal complexHomo sapiensProtein binding 3.30.70.330 90 21 90 4.28 4.76
2pehA01 86.98 Splicing factor 45SpliceosomeHomo sapiensProtein bindingSplicing factor 45 3.30.70.330 83 15 92 4.07 4.38
2errA01 86.68 Fox-1 homolog AProtein C-terminus bindingHomo sapiensTrans-Golgi network 3.30.70.330 83 27 94 2.29 2.43
2u2fA00 86.02 Splicing factor U2AF 65 kDa subunitSpliceosomeSpliceosomal complexSplicing factor U2AF 65 kDa subunitEnzyme binding 3.30.70.330 85 23 92 2.95 3.17
1no8A00 86.01 THO complex subunit 4Mus musculusSpliceosomeSingle-stranded DNA bindingRNA binding 3.30.70.330 78 26 91 2.39 2.61
2jwnA01 85.72 CytoplasmPoly(A) RNA bindingXenopus laevisEmbryonic polyadenylate-binding protein 2-B 3.30.70.330 100 20 82 3.00 3.66
1fjeB02 85.66 NucleolinMesocricetus auratus 3.30.70.330 84 19 94 2.90 3.08
1sjqA00 84.95 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 88 14 87 3.22 3.68
1hl6C00 84.44 SpliceosomeRNA-binding protein 8AMicrotubule cytoskeleton organizationNucleusDrosophila melanogaster 3.30.70.330 111 16 71 2.29 3.22
1uw4A00 84.01 Regulator of nonsense transcripts 3BNuclear-transcribed mRNA catabolic process, nonsense-mediated decayHomo sapiensProtein binding 3.30.70.330 90 13 87 3.59 4.09
1fjeB01 83.78 NucleolinMesocricetus auratus 3.30.70.330 81 19 89 2.59 2.90
1ufwA00 83.75 Phosphatidylinositol signaling systemSynaptojanin-2Phosphatidylinositol-bisphosphatase [EC:3.1.3.36]Homo sapiensInositol phosphate metabolism 3.30.70.330 95 16 77 2.72 3.49
1jmtA00 83.56 Spliceosomal complexSplicing factor U2AF 35 kDa subunitCajal bodyHomo sapiensProtein binding 3.30.70.330 98 10 78 2.53 3.22
1sjrA00 82.86 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 108 14 73 3.42 4.68
3sxlA02 82.82 Sex differentiationDrosophila melanogasterProtein complexPoly-pyrimidine tract bindingImaginal disc growth 3.30.70.330 55 30 65 1.28 1.95
1sxlA00 81.51 Sex differentiationDrosophila melanogasterProtein complexPoly-pyrimidine tract bindingNegative regulation of translation 3.30.70.330 97 26 86 4.11 4.75
1cvjH02 81.15 Poly(A) RNA bindingProtein C-terminus bindingMRNA polyadenylationTranslation activator activityPolyadenylate-binding protein 1 3.30.70.330 52 26 55 2.16 3.86
1whvA00 80.24 Mus musculusPoly(A)-specific ribonuclease PARN 3.30.70.330 100 14 72 3.34 4.64
2bopA00 79.51 Regulatory protein E2Bovine papillomavirus type 1 3.30.70.330 85 5 87 3.81 4.38
1kohA01 79.26 Nuclear RNA export factor 1Homo sapiensProtein binding 3.30.70.330 97 11 74 2.62 3.53
1in0A01 78.74 Hypothetical proteinHaemophilus influenzaeUPF0234 protein HI_1034 3.30.70.860 70 7 83 2.98 3.58
1mw7A03 78.44 Helicobacter pyloriUPF0082 protein HP_0162 3.30.70.980 75 5 78 3.74 4.76
1qm9A01 78.00 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 98 16 77 3.36 4.33
2od4B01 77.50 3.30.70.900 81 2 83 3.77 4.52
1eayD00 77.30 Bacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Escherichia coli K-12Chemotaxis protein cheA 3.30.70.400 69 13 77 3.58 4.63
2pd1A01 77.15 Nitrosomonas europaeaPutative uncharacterized protein 3.30.70.900 93 9 80 3.78 4.69
1wj9A01 76.95 Thermus thermophilus HB8Putative uncharacterized protein TTHB192 3.30.70.1200 87 3 79 3.90 4.92
2hiyB01 76.73 Streptococcus pneumoniaePutative uncharacterized protein 3.30.70.1280 87 5 75 3.38 4.46
1jqgA01 76.36 Carboxypeptidase AHelicoverpa armigera 3.30.70.340 91 9 78 3.37 4.32
1vr6A01 75.85 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysThermotoga maritima3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]Phospho-2-dehydro-3-deoxyheptonate aldolase 3.30.70.1140 75 8 80 3.52 4.35
1utaA00 75.09 Membrane fractionCell cycle cytokinesisCell division protein FtsNCell division protein ftsNProtein binding 3.30.70.1070 77 12 83 3.85 4.62
1fo1A01 74.42 Nuclear RNA export factor 1Homo sapiensProtein binding 3.30.70.330 55 10 63 2.93 4.64
1s99A01 74.35 Bacillus subtilisPutative HMP/thiamine-binding protein ykoF 3.30.70.930 77 5 76 3.79 4.97
1kn6A00 73.84 Mus musculusPeptide hormone processingSerine-type endopeptidase activityNeuroendocrine convertase 1Proprotein convertase subtilisin/kexin type 1 [EC:3.4.21.93] 3.30.70.850 73 9 80 3.58 4.42
1m1hA01 73.59 Transcriptional antiterminator NusGTranscription antitermination protein nusGAquifex aeolicus 3.30.70.940 100 8 73 3.55 4.86
1ft8A01 72.67 Nuclear RNA export factor 1Homo sapiensProtein binding 3.30.70.330 55 9 57 2.84 4.97
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Displaying entries 1 to 54 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1l3kA01
KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPK
RAVS
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1l3kA01
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVD
GRVVEPKRAVS
BLAST against CATH

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Domain History Events (2)

Insertion by lewis on 18 Jan 2007 19:38

Rechopping chains just before release v3.1.0 in order to fix missing fragments.

Domain assigned by lewis on 18 Jan 2007 19:38

Reassigning this domain to its previous classification as part of fragment fixing process in preparation for release v3.1.0.