CATH Domain: 1l2pA00 XML data for domain: 1l2pA00

Molscript image for 1l2pA00
1l2pA00
PDB coordinates for domain 1l2pA00

PDB 1l2p, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.5 Single alpha-helices involved in coiled-coils or other helix-helix interfaces
1.20.5.620 Single helix bin Gene3D
1.20.5.620.1
1.20.5.620.1.1
1.20.5.620.1.1.1
1.20.5.620.1.1.1.1
1.20.5.620.1.1.1.1.1

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Segment boundaries for domain 1l2pA00

Chopping figure for domain 1l2pA00
DomainStart PDB ResidueStop PDB Residue
1l2pA00 62 122

Structural Neighbourhood (26 entries)

There are 26 matching structural neighberhood comparisons for CATH ID 1.20.5.620.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 26 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1ybkA00 88.85 TetrabrachionStaphylothermus marinus 1.20.5.1060 52 13 83 1.92 2.30
3gwoA00 88.59 Human immunodeficiency virus type 1 lw12.3 isolateEnvelope glycoprotein gp160 1.10.287.210 53 5 85 1.18 1.38
2w83C00 87.28 Homo sapiensIntegral to membraneC-Jun-amino-terminal kinase-interacting protein 4SpermatogenesisPositive regulation of cell migration 1.20.5.1000 67 11 86 2.64 3.05
1pl5A00 87.06 Chromatin silencing complexLoss of chromatin silencing involved in replicative cell agingChromatin silencingDouble-strand break repair via nonhomologous end joiningDouble-stranded DNA binding 1.20.5.730 75 6 81 2.06 2.53
3e7kA00 85.52 Rattus norvegicusCalcium channel activityCalcium ion transportIntegral to membraneProtein binding 1.20.5.1010 54 0 85 3.58 4.20
1uixA00 85.26 Chemokine signaling pathwayRho-associated, coiled-coil containing protein kinase [EC:2.7.11.1]Leukocyte transendothelial migrationWnt signaling pathwayTGF-beta signaling pathway 1.20.5.730 68 18 88 3.14 3.56
2b9bA04 84.33 Simian virus 5 (strain W3)Fusion glycoprotein F0 1.20.5.1070 62 9 64 2.56 3.97
1ezjA02 84.12 Sendai virus (strain Harris)Phosphoprotein 1.10.287.340 52 1 65 2.18 3.32
1xmeB01 82.88 Cytochrome c oxidase subunit 2Thermus thermophilus 1.20.1070.10 44 9 60 1.01 1.67
2v4hB00 80.97 Mus musculusNF-kappa-B essential modulatorActivation of NF-kappaB-inducing kinase activityB cell homeostasis 1.20.5.990 91 13 67 2.75 4.10
1d7mA00 80.67 Cortexillin-1Response to bacteriumProtein homodimerization activityActin filament bundle assemblyActin filament network formation 1.20.5.1050 101 6 60 1.94 3.21
1favA00 80.26 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyEnvelope glycoprotein gp160General control protein GCN4General control protein GCN4 1.10.287.210 78 8 52 1.09 2.07
2zvoB00 78.95 Mus musculusNF-kappa-B essential modulatorActivation of NF-kappaB-inducing kinase activityB cell homeostasis 1.20.5.990 88 16 68 3.07 4.50
2wpqA00 78.62 Salmonella enterica subsp. enterica serovar TyphimuriumPutative inner membrane protein 1.20.5.980 99 6 61 2.74 4.45
1rh5B00 77.58 Protein transport protein SEC61 subunit gamma and related proteinsProtein exportMethanocaldococcus jannaschiiPreprotein translocase subunit secE 1.20.5.820 56 3 52 1.73 3.30
1kv4A00 77.52 Moricin-1Bombyx mori 1.20.5.750 42 7 60 3.00 4.95
1xrdA01 77.18 Light-harvesting complex 1 alpha chainRhodospirillum rubrumLight-harvesting protein B-870 alpha chain 1.20.5.890 43 4 68 3.21 4.66
1u57A00 77.06 Human immunodeficiency virus type 1 lw12.3 isolateGag polyprotein 1.20.5.760 48 6 55 1.89 3.39
1envA00 76.19 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyEnvelope glycoprotein gp160General control protein GCN4General control protein GCN4 1.10.287.210 115 14 50 2.09 4.14
1ozhA03 72.71 Acetolactate synthase, catabolicKlebsiella pneumoniae 1.20.5.740 24 8 39 1.75 4.45
1mg1A03 71.81 Bacterial chemotaxisABC transportersMaltose/maltodextrin transport system substrate-binding proteinEscherichia coli O157:H7Maltose-binding periplasmic protein 1.10.287.210 84 4 34 1.36 3.94
1vf5C03 71.01 Mastigocladus laminosusApocytochrome f 1.20.5.700 32 6 32 0.49 1.49
2zjsE00 70.61 Protein exportBacterial secretion systemThermus thermophilus HB8Preprotein translocase subunit secEPreprotein translocase subunit SecE 1.20.5.1030 46 2 39 0.97 2.47
1jadA00 66.17 Phospholipase C betaMeleagris gallopavo 1.20.1230.10 235 11 25 1.12 4.31
1d66B02 62.53 Regulatory protein GAL4NucleusSequence-specific DNA binding transcription factor activityTranscription activator activityPositive regulation of transcription by galactose 1.20.5.640 15 6 24 0.40 1.63
1mkmA02 59.94 Thermotoga maritimaTranscriptional regulator, IclR family 1.20.5.640 14 7 22 0.62 2.70
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Displaying entries 1 to 26 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1l2pA00
TDQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREELRK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1l2pA00
TDQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREELRK
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:33

HomCheck 'Assigned T' domains

Flow stage update by sillitoe on 06 Mar 2006 15:33

HomCheck 'Assigned T' domains

Insertion by auto on 05 Mar 2006 16:03

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"