CATH Domain: 1l1oC02 XML data for domain: 1l1oC02

Molscript image for 1l1oC02
1l1oC02
PDB coordinates for domain 1l1oC02

PDB 1l1o, Chain C, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.20 Single Sheet
2.20.25 N-terminal domain of TfIIb
2.20.25.10 Gene3D
2.20.25.10.11
2.20.25.10.11.1
2.20.25.10.11.1.1
2.20.25.10.11.1.1.1
2.20.25.10.11.1.1.1.1

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Segment boundaries for domain 1l1oC02

Chopping figure for domain 1l1oC02
DomainStart PDB ResidueStop PDB Residue
1l1oC01 439 475
1l1oC01 515 615
1l1oC02 477 514

Structural Neighbourhood (5 entries)

There are 5 matching structural neighberhood comparisons for CATH ID 2.20.25.10.11.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 5 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2ywwB02 80.08 Pyrimidine metabolismMethanocaldococcus jannaschiiAspartate carbamoyltransferase regulatory subunitAlanine, aspartate and glutamate metabolismAspartate carbamoyltransferase regulatory chain 2.30.30.20 51 13 72 2.76 3.80
2airB02 79.97 Pyrimidine metabolismAlanine, aspartate and glutamate metabolismMetabolic pathwaysCytoplasmAspartate carbamoyltransferase regulatory subunit 2.30.30.20 53 18 69 2.99 4.28
2k2dA00 77.38 Zinc ion bindingProtein homodimerization activityRING finger and CHY zinc finger domain-containing protein 1Positive regulation of protein ubiquitinationPositive regulation of proteasomal ubiquitin-dependent protein catabolic process 2.20.28.10 47 10 78 3.39 4.31
1tfiA00 76.43 Transcription from RNA polymerase II promoterTranscription elongation factor S-IITranscription elongation factor A protein 1General RNA polymerase II transcription factor activityHomo sapiens 2.20.25.10 50 13 66 3.09 4.68
1twfL00 75.67 Pyrimidine metabolismPurine metabolismRNA polymeraseMetabolic pathwaysTranscription from RNA polymerase II promoter 2.20.28.30 46 15 73 3.04 4.11
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Displaying entries 1 to 5 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1l1oC02
MYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRM
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1l1oC02
MYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRM
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 05 Mar 2006 17:07

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"