CATH Domain: 1l0wA01 XML data for domain: 1l0wA01

Molscript image for 1l0wA01
1l0wA01
PDB coordinates for domain 1l0wA01

PDB 1l0w, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.50 OB fold (Dihydrolipoamide Acetyltransferase, E2P)
2.40.50.140 Nucleic acid-binding proteins Gene3D
2.40.50.140.6
2.40.50.140.6.1
2.40.50.140.6.1.1
2.40.50.140.6.1.1.1
2.40.50.140.6.1.1.1.1

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Segment boundaries for domain 1l0wA01

Chopping figure for domain 1l0wA01
DomainStart PDB ResidueStop PDB Residue
1l0wA01 1 106
1l0wA02 137 277
1l0wA02 416 580
1l0wA03 278 415

Structural Neighbourhood (27 entries)

There are 27 matching structural neighberhood comparisons for CATH ID 2.40.50.140.6.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 27 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1n9wA01 88.50 Aminoacyl-tRNA biosynthesisNondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23]Aspartyl-tRNA synthetase 2Thermus thermophilus 2.40.50.140 92 39 85 1.79 2.09
1ltlA02 85.77 Methanothermobacter thermautotrophicus str. Delta HDNA replication initiator (Cdc21/Cdc54)Replicative DNA helicase Mcm [EC:3.6.1.-] 2.40.50.140 100 16 84 2.91 3.43
1eovA01 85.07 Aspartate-tRNA ligase activityIdentical protein bindingNucleusAspartyl-tRNA synthetase, cytoplasmicAspartyl-tRNA aminoacylation 2.40.50.140 134 22 78 2.07 2.64
2oq0B02 84.20 Gamma-interferon-inducible protein 16NucleolusMonocyte differentiationDouble-stranded DNA bindingProtein binding 2.40.50.140 86 10 78 2.02 2.58
1nnxA00 84.16 Escherichia coli O157:H7Protein ygiW 2.40.50.200 93 15 81 2.82 3.48
3lgjB00 83.85 DNA replicationHomologous recombinationBartonella henselaeSingle-strand DNA-binding proteinSingle-stranded DNA-binding protein 2.40.50.140 96 12 76 3.01 3.94
1wocC00 83.45 Homologous recombinationPrimosomal replication protein NEscherichia coli K-12Primosomal replication protein n 2.40.50.140 98 11 76 2.46 3.22
1e1oA01 83.33 Aminoacyl-tRNA biosynthesisMembraneLysyl-tRNA synthetase, class II [EC:6.1.1.6]CytosolLysyl-tRNA aminoacylation 2.40.50.140 140 22 70 2.07 2.93
1lm0A00 82.99 Cytochrome c-type biogenesis protein ccmECytochrome c-type biogenesis protein CcmEShewanella oneidensis 2.40.50.140 101 7 80 2.25 2.81
1fguB01 82.94 Replication factor A1DNA-dependent DNA replicationDNA replicationNucleotide excision repairReplication protein A 70 kDa DNA-binding subunit 2.40.50.140 105 13 88 3.10 3.50
1bbuA01 82.83 Aminoacyl-tRNA biosynthesisMembraneLysyl-tRNA synthetase, class II [EC:6.1.1.6]Protein bindingLysyl-tRNA aminoacylation 2.40.50.140 140 21 70 2.15 3.04
3bjuB01 82.14 Lysine-tRNA ligase activityLysyl-tRNA synthetaseSoluble fractionHomo sapiensLysyl-tRNA aminoacylation 2.40.50.140 142 13 69 2.19 3.14
3kdfA00 81.98 DNA replicationNucleotide excision repairCytoplasmHomologous recombinationReplication protein A 14 kDa subunit 2.40.50.140 110 12 72 3.53 4.85
2hqlA01 81.43 Uncharacterized protein MG376 homologMycoplasma pneumoniae 2.40.50.140 91 10 75 3.26 4.32
1miuA03 81.09 HemopoiesisInner cell mass cell proliferationResponse to X-rayPositive regulation of mitotic cell cycleDNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator 2.40.50.140 117 11 82 3.26 3.93
1jb7A02 79.67 Telomere-binding protein subunit alphaSterkiella nova 2.40.50.140 116 10 76 3.74 4.87
1xjvA01 78.07 Protection of telomeres protein 1Negative regulation of telomerase activitySingle-stranded telomeric DNA bindingDNA duplex unwindingTelomere formation via telomerase 2.40.50.140 142 8 64 2.75 4.29
1cukA01 78.07 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAEscherichia coli K-12 2.40.50.140 66 4 62 2.81 4.51
2jqoA01 77.67 Bacillus subtilisUncharacterized protein yobA 2.40.50.140 88 7 62 2.36 3.79
1fjgQ00 76.80 Thermus thermophilus HB830S ribosomal protein S17Small subunit ribosomal protein S17Ribosome 2.40.50.140 104 7 64 2.91 4.54
2zteA01 76.46 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAMycobacterium tuberculosis 2.40.50.140 65 12 61 2.70 4.40
3hksA02 75.26 NucleusEukaryotic translation initiation factor 5A-2Host programmed cell death induced by symbiontTranslational initiationDefense response to bacterium 2.40.50.140 75 12 67 3.21 4.73
1qzgA00 74.95 Protection of telomeres protein 1Protection of telomeres protein 1Single-stranded telomeric DNA bindingProtein bindingCytosol 2.40.50.140 170 9 57 2.82 4.94
1bkbA02 74.09 Pyrobaculum aerophilumTranslation initiation factor 5A 2.40.50.140 62 8 58 2.80 4.79
1g29102 73.83 Maltose transport protein MalKThermococcus litoralis 2.40.50.140 45 20 42 1.57 3.70
3d31A02 73.13 Methanosarcina acetivoransPutative sulfate transport system ATP-binding proteinSulfate/molybdate ABC transporter, ATP-binding proteinABC transporters 2.40.50.140 46 19 43 2.01 4.63
1oxxK02 70.94 ABC transporter, ATP binding protein (Glucose)Glucose/arabinose transport system ATP-binding proteinSulfolobus solfataricusABC transporters 2.40.50.140 45 15 40 1.90 4.68
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Displaying entries 1 to 27 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1l0wA01
MRRTHYAGSLRETHVGEEVVLEGWVNRRRDLGGLIFLDLRDREGLVQLVAHPASPAYATAERVRPEWVVRAKGLVRLRPE
PNPRLATGRVEVELSALEVLAEAKTP
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1l0wA01
MRRTHYAGSLRETHVGEEVVLEGWVNRRRDLGGLIFLDLRDREGLVQLVAHPASPAYATAERVRPEWVVRAKGLVRLRPE
PNPRLATGRVEVELSALEVLAEAKTP
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:31

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:31

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:07

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"