CATH Domain: 1kyhA00 XML data for domain: 1kyhA00

Molscript image for 1kyhA00
1kyhA00
PDB coordinates for domain 1kyhA00

PDB 1kyh, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.1190 UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase
3.40.1190.20 Gene3D
3.40.1190.20.5
3.40.1190.20.5.1
3.40.1190.20.5.1.1
3.40.1190.20.5.1.1.1
3.40.1190.20.5.1.1.1.1

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Segment boundaries for domain 1kyhA00

Chopping figure for domain 1kyhA00
DomainStart PDB ResidueStop PDB Residue
1kyhA00 2 276

Structural Neighbourhood (2 entries)

There are 2 matching structural neighberhood comparisons for CATH ID 3.40.1190.20.5.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 2 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2r3bA01 86.91 YjeF-related proteinEnterococcus faecalis 3.40.1190.20 266 23 92 2.42 2.61
1rkdA00 75.33 Pentose phosphate pathwayD-ribose catabolic processRibokinase activityRibokinaseRibokinase [EC:2.7.1.15] 3.40.1190.20 306 15 74 3.70 4.99
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Displaying entries 1 to 2 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1kyhA00
NVPFWTEEHVRATLPERTYGTALLLAGSDDPGAALLAGLGARSGLGKLVIGTSENVIPLIVPVLPEATYWRDGWKKAADA
QLEETYRAIAIGPGLPQTESVQQAVDHVLTADCPVILDAGALAKRTYPKREGPVILTPHPGEFFRTGVPVNELQKKRAEY
AKEWAAQLQTVIVLKGNQTVIAFPDGDCWLNPTGNGALAKGGTGDTLTGILGLCCHEDPKHAVLNAVYLHGACAELWTDE
HSAHTLLAHELSDILPRVWKRFE
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1kyhA00
XNVPFWTEEHVRATLPERDAESHKGTYGTALLLAGSDDXPGAALLAGLGAXRSGLGKLVIGTSENVIPLIVPVLPEATYW
RDGWKKAADAQLEETYRAIAIGPGLPQTESVQQAVDHVLTADCPVILDAGALAKRTYPKREGPVILTPHPGEFFRXTGVP
VNELQKKRAEYAKEWAAQLQTVIVLKGNQTVIAFPDGDCWLNPTGNGALAKGGTGDTLTGXILGXLCCHEDPKHAVLNAV
YLHGACAELWTDEHSAHTLLAHELSDILPRVWKRFE
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:29

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:29

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:52

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"