CATH Domain: 1kx5B00 XML data for domain: 1kx5B00

Molscript image for 1kx5B00
1kx5B00
PDB coordinates for domain 1kx5B00

PDB 1kx5, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.20 Histone, subunit A
1.10.20.10 Histone, subunit A Gene3D
1.10.20.10.4
1.10.20.10.4.1
1.10.20.10.4.1.1
1.10.20.10.4.1.1.1
1.10.20.10.4.1.1.1.1

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Segment boundaries for domain 1kx5B00

Chopping figure for domain 1kx5B00
DomainStart PDB ResidueStop PDB Residue
1kx5B00 1 102

Structural Neighbourhood (6 entries)

There are 6 matching structural neighberhood comparisons for CATH ID 1.10.20.10.4.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 6 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1n1jB00 83.67 Nuclear transcription factor Y subunit gammaSequence-specific DNA binding transcription factor activityRegulation of transcription from RNA polymerase II promoterHomo sapiensRNA polymerase II transcription factor activity 1.10.20.10 78 17 71 1.89 2.64
1tafA00 83.22 Transcription factor TFIID complexSAGA complexTranscription initiation factor TFIID subunit D7Transcription initiation factor TFIID subunit 9Drosophila melanogaster 1.10.20.10 67 17 65 1.61 2.45
1h3oB00 82.63 General RNA polymerase II transcription factor activityTranscription initiation factor TFIID subunit 12STAGA complexHistone H3 acetylationPlasma membrane 1.10.20.10 71 23 68 1.68 2.45
2hueB00 81.54 Systemic lupus erythematosusHistone H3.2Xenopus laevisHistone H3 1.10.20.10 75 21 68 2.21 3.22
1jfiA00 80.10 Sequence-specific DNA binding transcription factor activityTranscription corepressor activityHomo sapiensNegative regulation of transcription from RNA polymerase II promoterDr1-associated corepressor 1.10.20.10 63 14 60 1.69 2.78
1jfiB00 77.98 Protein Dr1Transcription corepressor activityHomo sapiensNegative regulation of transcription from RNA polymerase II promoter 1.10.20.10 135 12 57 2.27 3.93
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Displaying entries 1 to 6 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1kx5B00
SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT
VTAMDVVYALKRQGRTLYGFGG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1kx5B00
SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT
VTAMDVVYALKRQGRTLYGFGG
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:24

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"