CATH Domain: 1kufA00 XML data for domain: 1kufA00

Molscript image for 1kufA00
1kufA00
PDB coordinates for domain 1kufA00

PDB 1kuf, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.390 Collagenase (Catalytic Domain)
3.40.390.10 Collagenase (Catalytic Domain) Gene3D
3.40.390.10.1
3.40.390.10.1.2
3.40.390.10.1.2.1
3.40.390.10.1.2.1.1
3.40.390.10.1.2.1.1.1

[top]
Segment boundaries for domain 1kufA00

Chopping figure for domain 1kufA00
DomainStart PDB ResidueStop PDB Residue
1kufA00 3 203

Structural Neighbourhood (2 entries)

There are 2 matching structural neighberhood comparisons for CATH ID 3.40.390.10.1.2.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 2 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1r55A00 91.79 Disintegrin and metalloproteinase domain-containing protein 33Disintegrin and metalloproteinase domain-containing protein 33 [EC:3.4.24.-]Homo sapiens 3.40.390.10 203 37 97 1.76 1.81
2ddfA00 83.36 Cell surfaceEpithelial cell signaling in Helicobacter pylori infectionSH3 domain bindingAlzheimer's diseaseInterleukin-6 receptor binding 3.40.390.10 253 21 77 2.71 3.50
[1]
Displaying entries 1 to 2 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1kufA00
QRFPQRYIELAIVVDHGMYTKYSSNFKKIRKRVHQMVSNINEMCRPLNIAITLALLDVWSEKDFITVQADAPTTAGLFGD
WRERVLLKKKNHDHAQLLTDTNFARNTIGWAYVGRMCDEKYSVAVVKDHSSKVFMVAVTMTHELGHNLGMEHDDKDKCKC
DTCIMSAVISDKQSKLFSDCSKDYYQTFLTNDNPQCILNAP
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1kufA00
EQQRFPQRYIELAIVVDHGMYTKYSSNFKKIRKRVHQMVSNINEMCRPLNIAITLALLDVWSEKDFITVQADAPTTAGLF
GDWRERVLLKKKNHDHAQLLTDTNFARNTIGWAYVGRMCDEKYSVAVVKDHSSKVFMVAVTMTHELGHNLGMEHDDKDKC
KCDTCIMSAVISDKQSKLFSDCSKDYYQTFLTNDNPQCILNAP
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:26

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:26

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:48

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"