CATH Domain: 1ks8A00 XML data for domain: 1ks8A00

Molscript image for 1ks8A00
1ks8A00
PDB coordinates for domain 1ks8A00

PDB 1ks8, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.50 Alpha/alpha barrel
1.50.10 Glycosyltransferase
1.50.10.10 Gene3D
1.50.10.10.3
1.50.10.10.3.1
1.50.10.10.3.1.1
1.50.10.10.3.1.1.1
1.50.10.10.3.1.1.1.1

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Segment boundaries for domain 1ks8A00

Chopping figure for domain 1ks8A00
DomainStart PDB ResidueStop PDB Residue
1ks8A00 1 433

Structural Neighbourhood (2 entries)

There are 2 matching structural neighberhood comparisons for CATH ID 1.50.10.10.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 2 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1clcA02 84.82 Clostridium thermocellumEndoglucanase D 1.50.10.10 439 21 91 2.59 2.84
1ut9A02 81.36 Clostridium thermocellumCellobiohydrolase 1.50.10.10 507 19 80 3.05 3.79
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Displaying entries 1 to 2 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ks8A00
MAYDYKQVLRDSLLFYEAQRSGRLPADQKVTWRKDSALNDQGDQGQDLTGGYFDAGDFVKFGFPMAYTATVLAWGLIDFE
AGYSSAGALDDGRKAVKWATDYFIKAHTSQNEFYGQVGQGDADHAFWGRPEDMTMARPAYKIDTSRPGSDLAGETAAALA
AASIVFRNVDGTYSNNLLTHARQLFDFANNYRGKYSDSITDARNFYASADYRDELVWAAAWLYRATNDNTYLNTAESLYD
EFGLQNWGGGLNWDSKVSGVQVLLAKLTNKQAYKDTVQSYVNYLINNQQKTPKGLLYIDMWGTLRHAANAAFIMLEAAEL
GLSASSYRQFAQTQIDYALGDGGRSFVCGFGSNPPTRPHHRSSSCPPAPATCDWNTFNSPDPNYHVLSGALVGGPDQNDN
YVDDRSDYVHNEVATDYNAGFQSALAALVALGY
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ks8A00
MAYDYKQVLRDSLLFYEAQRSGRLPADQKVTWRKDSALNDQGDQGQDLTGGYFDAGDFVKFGFPMAYTATVLAWGLIDFE
AGYSSAGALDDGRKAVKWATDYFIKAHTSQNEFYGQVGQGDADHAFWGRPEDMTMARPAYKIDTSRPGSDLAGETAAALA
AASIVFRNVDGTYSNNLLTHARQLFDFANNYRGKYSDSITDARNFYASADYRDELVWAAAWLYRATNDNTYLNTAESLYD
EFGLQNWGGGLNWDSKVSGVQVLLAKLTNKQAYKDTVQSYVNYLINNQQKTPKGLLYIDMWGTLRHAANAAFIMLEAAEL
GLSASSYRQFAQTQIDYALGDGGRSFVCGFGSNPPTRPHHRSSSCPPAPATCDWNTFNSPDPNYHVLSGALVGGPDQNDN
YVDDRSDYVHNEVATDYNAGFQSALAALVALGY
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:22

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:22

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:45

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"