CATH Domain: 1krhA02 XML data for domain: 1krhA02

Molscript image for 1krhA02
1krhA02
PDB coordinates for domain 1krhA02

PDB 1krh, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.30 Elongation Factor Tu (Ef-tu); domain 3
2.40.30.10 Translation factors Gene3D
2.40.30.10.7
2.40.30.10.7.1
2.40.30.10.7.1.1
2.40.30.10.7.1.1.1
2.40.30.10.7.1.1.1.1

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Segment boundaries for domain 1krhA02

Chopping figure for domain 1krhA02
DomainStart PDB ResidueStop PDB Residue
1krhA01 2 104
1krhA02 105 201
1krhA03 202 335

Structural Neighbourhood (17 entries)

There are 17 matching structural neighberhood comparisons for CATH ID 2.40.30.10.7.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 17 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2qdxA01 88.58 Pseudomonas aeruginosaFerredoxin--NADP+ reductase [EC:1.18.1.2]Ferredoxin--NADP+ reductase 2.40.30.10 95 23 94 2.15 2.27
1qfjA01 86.52 Porphyrin and chlorophyll metabolismAquacobalamin reductase / NAD(P)H-flavin reductase [EC:1.16.1.3 1.5.1.29]NAD(P)H-flavin reductaseEscherichia coli K-12 2.40.30.10 91 17 87 2.37 2.70
2piaA01 86.10 Burkholderia cepaciaPhthalate dioxygenase reductase 2.40.30.10 104 19 92 2.77 3.00
2gpjA01 85.71 Siderophore-interacting proteinShewanella putrefaciens CN-32 2.40.30.10 98 13 94 2.66 2.80
1ep3B01 85.37 Lactococcus lactis subsp. cremoris MG1363Dihydroorotate dehydrogenase electron transfer subunitProtein bindingDihydroorotate dehydrogenase electron transfer subunit 2.40.30.10 99 17 94 2.70 2.84
2bmwA01 83.17 Nostoc sp. PCC 7119Flavin adenine dinucleotide bindingFerredoxin--NADP reductaseProtein bindingFerredoxin-NADP+ reductase activity 2.40.30.10 128 24 73 1.88 2.56
1i8dA01 82.72 Riboflavin metabolismMetabolic pathwaysRiboflavin synthase activityRiboflavin synthase alpha chain [EC:2.5.1.9]Riboflavin synthase alpha chain 2.40.30.20 89 11 85 3.02 3.53
1ddgA01 82.69 Sulfur metabolismMetabolic pathwaysSulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]Sulfite reductase [NADPH] flavoprotein alpha-componentProtein binding 2.40.30.10 114 16 78 2.42 3.10
2r6hA01 82.12 Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:1.6.5.-]Porphyromonas gingivalisNADH:ubiquinone oxidoreductase, Na translocating, F subunit 2.40.30.10 138 25 65 1.99 3.02
1ja1A02 81.43 Rattus norvegicusNitric oxide catabolic processMicrosomeCellular response to peptide hormone stimulusNADPH-ferrihemoprotein reductase [EC:1.6.2.4] 2.40.30.10 122 13 74 2.52 3.38
1kzlA02 80.97 NucleusCytosolSchizosaccharomyces pombeMetabolic pathwaysRiboflavin metabolism 2.40.30.20 101 9 84 2.71 3.22
2rc5B01 80.62 Leptospira interrogansFerredoxin--NADP reductase 2.40.30.10 140 21 67 2.37 3.53
1i8dC02 78.85 Riboflavin metabolismMetabolic pathwaysRiboflavin synthase activityRiboflavin synthase alpha chain [EC:2.5.1.9]Riboflavin synthase alpha chain 2.40.30.20 88 9 77 2.85 3.69
2ck3D01 78.80 ATP catabolic processParkinson's diseaseOxidative phosphorylationAlzheimer's diseaseMetabolic pathways 2.40.10.170 73 13 75 3.17 4.21
1d1nA00 76.36 Geobacillus stearothermophilusTranslation initiation factor IF-2 2.40.30.10 98 8 82 3.58 4.33
1mrzB02 75.07 Riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]Riboflavin metabolismThermotoga maritimaRiboflavin kinase/FMN adenylyltransferaseMetabolic pathways 2.40.30.30 112 10 66 2.85 4.26
1pj5A05 73.94 N,N-dimethylglycine oxidaseArthrobacter globiformis 2.40.30.110 78 10 65 3.11 4.71
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Displaying entries 1 to 17 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1krhA02
KIHHFEGTLARVENLSDSTITFDIQLDDGQPDIHFLAGQYVNVTLPGTTETRSYSFSSQPGNRLTGFVVRNVPQGKMSEY
LSVQAKAGDKMSFTGPF
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1krhA02
KIHHFEGTLARVENLSDSTITFDIQLDDGQPDIHFLAGQYVNVTLPGTTETRSYSFSSQPGNRLTGFVVRNVPQGKMSEY
LSVQAKAGDKMSFTGPF
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:29

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:29

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:05

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"