CATH Domain: 1krhA01 XML data for domain: 1krhA01

Molscript image for 1krhA01
1krhA01
PDB coordinates for domain 1krhA01

PDB 1krh, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.20 Ubiquitin-like (UB roll)
3.10.20.30 Gene3D
3.10.20.30.5
3.10.20.30.5.1
3.10.20.30.5.1.1
3.10.20.30.5.1.1.1
3.10.20.30.5.1.1.1.1

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Segment boundaries for domain 1krhA01

Chopping figure for domain 1krhA01
DomainStart PDB ResidueStop PDB Residue
1krhA01 2 104
1krhA02 105 201
1krhA03 202 335

Structural Neighbourhood (13 entries)

There are 13 matching structural neighberhood comparisons for CATH ID 3.10.20.30.5.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 13 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1xlqA00 86.19 PutidaredoxinPseudomonas putida 3.10.20.30 106 22 90 4.15 4.58
2piaA03 86.10 Burkholderia cepaciaPhthalate dioxygenase reductase 3.10.20.30 96 18 82 2.27 2.75
1l5pA00 85.62 FerredoxinTrichomonas vaginalis 3.10.20.30 93 20 83 2.67 3.20
2bt6B00 84.86 Bos taurusProtein homodimerization activitySteroid biosynthetic processProtein C-terminus bindingAdrenodoxin, mitochondrial 3.10.20.30 104 17 91 3.24 3.55
2bs2B01 81.26 Benzoate degradation via CoA ligationButanoate metabolismOxidative phosphorylationTwo-component systemCitrate cycle (TCA cycle) 3.10.20.30 106 12 75 3.15 4.17
1vlbA01 80.20 Desulfovibrio gigasAldehyde oxidoreductase 3.10.20.30 74 17 64 2.23 3.48
1jq4A00 79.12 Methane monooxygenase component CMethane metabolismMethylococcus capsulatusMethane monooxygenase [EC:1.14.13.25]Metabolic pathways 3.10.20.30 98 26 91 3.76 4.12
2h88B01 78.86 Citrate cycle (TCA cycle)Oxidative phosphorylationSuccinate dehydrogenase (ubiquinone) iron-sulfur protein [EC:1.3.5.1]Gallus gallusMetabolic pathways 3.10.20.30 107 13 74 3.69 4.94
1uh6A00 75.24 Mus musculusUbiquitin-like protein 5Ubiquitin-like protein 5 3.10.20.90 100 4 65 2.98 4.58
1yqbA01 75.12 Ubiquilin-3Homo sapiensUbiquilin 3.10.20.90 71 4 62 2.79 4.49
2kd0A01 74.96 LRR repeats and ubiquitin-like domain-containing protein At2g30105Arabidopsis thaliana 3.10.20.90 71 11 62 2.65 4.26
1j8cA00 74.68 CytoplasmPlasma membraneHomo sapiensUbiquilinUbiquilin-2 3.10.20.90 103 4 64 3.02 4.71
1wh3A01 74.28 CytoplasmDNA binding59 kDa 2'-5'-oligoadenylate synthase-like proteinThyroid hormone receptor bindingNucleolus 3.10.20.90 71 8 62 2.83 4.55
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Displaying entries 1 to 13 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1krhA01
SNHQVALQFEDGVTRFICIAQGETLSDAAYRQQINIPMDCREGECGTCRAFCESGNYDMPEDNYIEDALTPEEAQQGYVL
ACQCRPTSDAVFQIQASSEVCKT
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1krhA01
MSNHQVALQFEDGVTRFICIAQGETLSDAAYRQQINIPMDCREGECGTCRAFCESGNYDMPEDNYIEDALTPEEAQQGYV
LACQCRPTSDAVFQIQASSEVCKT
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:50

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:50

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:05

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"