CATH Domain: 1kqpA00 XML data for domain: 1kqpA00

Molscript image for 1kqpA00
1kqpA00
PDB coordinates for domain 1kqpA00

PDB 1kqp, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.620 Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1 Gene3D
3.40.50.620.15
3.40.50.620.15.1
3.40.50.620.15.1.1
3.40.50.620.15.1.1.1
3.40.50.620.15.1.1.1.1

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Segment boundaries for domain 1kqpA00

Chopping figure for domain 1kqpA00
DomainStart PDB ResidueStop PDB Residue
1kqpA00 1 271

Structural Neighbourhood (1 entries)

There are 1 matching structural neighberhood comparisons for CATH ID 3.40.50.620.15.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 1 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3fiuA00 88.63 Nitrogen metabolismNicotinate and nicotinamide metabolismMetabolic pathwaysNH(3)-dependent NAD(+) synthetaseFrancisella tularensis subsp. holarctica LVS 3.40.50.620 238 37 87 1.85 2.12
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Displaying entries 1 to 1 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1kqpA00
SMQEKIMRELHVKPSIDPKQEIEDRVNFLKQYVKKTGAKGFVLGISGGQDSTLAGRLAQLAVESIREEGGDAQFIAVRLP
HGTQQDEDDAQLALKFIKPDKSWKFDIKSTVSAFSDQYQQETGDQLTDFNKGNVKARTRMIAQYAIGGQEGLLVLGTDHA
AEAVTGFFTKYGDGGADLLPLTGLTKRQGRTLLKELGAPERLYLKEPTADLLDEKPQQSDETELGISYDEIDDYLEGKEV
SAKVSEALEKRYSMTEHKRQVPASMFDDWWK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1kqpA00
SMQEKIMRELHVKPSIDPKQEIEDRVNFLKQYVKKTGAKGFVLGISGGQDSTLAGRLAQLAVESIREEGGDAQFIAVRLP
HGTQQDEDDAQLALKFIKPDKSWKFDIKSTVSAFSDQYQQETGDQLTDFNKGNVKARTRMIAQYAIGGQEGLLVLGTDHA
AEAVTGFFTKYGDGGADLLPLTGLTKRQGRTLLKELGAPERLYLKEPTADLLDEKPQQSDETELGISYDEIDDYLEGKEV
SAKVSEALEKRYSMTEHKRQVPASMFDDWWK
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:15

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:15

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:39

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"