CATH Domain: 1kq1H00 XML data for domain: 1kq1H00

Molscript image for 1kq1H00
1kq1H00
PDB coordinates for domain 1kq1H00

PDB 1kq1, Chain H, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.30 Roll
2.30.30 SH3 type barrels.
2.30.30.100 Gene3D
2.30.30.100.1
2.30.30.100.1.1
2.30.30.100.1.1.1
2.30.30.100.1.1.1.1
2.30.30.100.1.1.1.1.1

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Segment boundaries for domain 1kq1H00

Chopping figure for domain 1kq1H00
DomainStart PDB ResidueStop PDB Residue
1kq1H00 1 66

Structural Neighbourhood (21 entries)

There are 21 matching structural neighberhood comparisons for CATH ID 2.30.30.100.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 21 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1u1sA00 93.54 RNA degradationPseudomonas aeruginosaHost factor-I proteinProtein hfq 2.30.30.100 66 28 90 0.74 0.81
1mgqF00 87.83 Methanothermobacter thermautotrophicus str. Delta HSmall nuclear ribonucleoproteinPutative snRNP Sm-like protein 2.30.30.100 70 18 82 1.56 1.88
1b34B00 87.66 SpliceosomeSpliceosomal complexSmall nuclear ribonucleoprotein Sm D2Homo sapiensSmall nuclear ribonucleoprotein D2 2.30.30.100 74 12 82 1.63 1.98
1m5q101 86.69 Pyrobaculum aerophilumSmall nuclear ribonucleoprotein homolog (Sm-like) 2.30.30.100 67 21 83 1.57 1.88
1n9rB00 86.60 Protein bindingNuclear mRNA splicing, via spliceosomeSmall nuclear ribonucleoprotein FSmall nuclear ribonucleoprotein FU5 snRNP 2.30.30.100 69 13 78 1.82 2.33
1d3bC00 86.20 SpliceosomeSystemic lupus erythematosusSmall nuclear ribonucleoprotein Sm D3Small nuclear ribonucleoprotein D3Spliceosomal complex 2.30.30.100 71 16 81 1.77 2.17
1ljoA00 85.39 Archaeoglobus fulgidusSnRNP, putative 2.30.30.100 75 10 82 2.47 2.99
2k57A00 84.34 Pseudomonas syringae pv. phaseolicola 1448ALipoprotein, putative 2.30.30.100 55 14 74 1.75 2.36
1ib8A02 84.08 Hypothetical proteinRibosome maturation factor rimPStreptococcus pneumoniae 2.30.30.180 67 9 86 2.50 2.89
1d3bB00 83.85 Small nuclear ribonucleoprotein-associated proteins B and B'Spliceosomal complexU7 snRNPHomo sapiensProtein binding 2.30.30.100 81 13 67 1.71 2.52
1b34A00 83.69 SpliceosomeSystemic lupus erythematosusSmall nuclear ribonucleoprotein Sm D1RNA bindingProtein binding 2.30.30.100 80 19 72 1.78 2.46
3bw1A00 83.06 U6 snRNA-associated Sm-like protein LSm3Small nucleolar ribonucleoprotein complexRNA degradationNucleolusRNA binding 2.30.30.100 86 9 72 2.22 3.08
1biaA03 81.63 Biotin metabolismDNA bindingBirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]Bifunctional protein birABiotin-[acetyl-CoA-carboxylase] ligase activity 2.30.30.100 47 12 69 1.79 2.57
2ra2B00 80.40 Salmonella enterica subsp. enterica serovar TyphimuriumPutative lipoprotein 2.30.30.100 55 5 71 2.88 4.04
3by7E00 79.74 2.30.30.100 74 10 60 2.30 3.78
1pm3A00 79.20 Methanothermobacter thermautotrophicus str. Delta HPutative uncharacterized protein 2.30.30.240 69 6 78 3.13 4.00
1mhnA00 78.53 Survival motor neuron proteinSurvival motor neuron proteinHomo sapiensProtein binding 2.30.30.140 59 8 81 3.93 4.80
2g3rA01 78.38 CytoplasmHomo sapiensTumor suppressor p53-binding protein 1Protein binding 2.30.30.140 53 11 75 3.43 4.53
1mmdA01 76.97 ActomyosinMyosin II complexActin-myosin filament slidingProtein localizationActin filament binding 2.30.30.360 48 6 63 2.97 4.67
1sf9A02 76.41 Bacillus subtilisUncharacterized protein yfhH 2.30.30.340 54 11 77 3.80 4.92
3be3A00 74.69 Bordetella bronchisepticaPutative uncharacterized protein 2.30.30.320 75 7 64 3.08 4.81
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Displaying entries 1 to 21 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1kq1H00
MIANENIQDKALENFKANQTEVTVFFLNGFQMKGVIEEYDKYVVSLNSQGKQHLIYKHAISTYTVE
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1kq1H00
MIANENIQDKALENFKANQTEVTVFFLNGFQMKGVIEEYDKYVVSLNSQGKQHLIYKHAISTYTVETEGQASTESEE
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:24

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:24

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:48

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"