CATH Domain: 1kolA01 XML data for domain: 1kolA01

Molscript image for 1kolA01
1kolA01
PDB coordinates for domain 1kolA01

PDB 1kol, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.90 Alpha-Beta Complex
3.90.180 Quinone Oxidoreductase; Chain A, domain 1
3.90.180.10 Medium-chain alcohol dehydrogenases, catalytic domain Gene3D
3.90.180.10.4
3.90.180.10.4.1
3.90.180.10.4.1.1
3.90.180.10.4.1.1.1
3.90.180.10.4.1.1.1.1

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Segment boundaries for domain 1kolA01

Chopping figure for domain 1kolA01
DomainStart PDB ResidueStop PDB Residue
1kolA01 2 170
1kolA01 338 397
1kolA02 171 337

Structural Neighbourhood (13 entries)

There are 13 matching structural neighberhood comparisons for CATH ID 3.90.180.10.4.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 13 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2xaaC01 84.68 Rhodococcus ruberSecondary alcohol dehydrogenase 3.90.180.10 208 23 87 2.18 2.50
1pl8A01 84.56 Zinc ion bindingMembrane fractionL-iditol 2-dehydrogenase [EC:1.1.1.14]Glucose metabolic processSorbitol catabolic process 3.90.180.10 217 18 89 2.16 2.40
1f8fA01 84.07 Acinetobacter calcoaceticusBenzyl alcohol dehydrogenase 3.90.180.10 225 19 86 2.27 2.61
1vj0B01 83.22 Butanoate metabolismThermotoga maritima[EC:1.1.1.-]Alcohol dehydrogenase, zinc-containingFructose and mannose metabolism 3.90.180.10 217 17 88 2.71 3.07
1lluA01 83.07 Tyrosine metabolismFatty acid metabolism1- and 2-Methylnaphthalene degradationMetabolic pathwaysMetabolism of xenobiotics by cytochrome P450 3.90.180.10 203 19 84 2.05 2.42
1piwA01 81.85 NADP-dependent alcohol dehydrogenase 6Alcohol dehydrogenase (NADP+) activityAlcohol metabolic processHydroxymethylfurfural reductase (NADH) activitySoluble fraction 3.90.180.10 223 18 90 3.07 3.40
1yqdA01 81.40 Sinapyl alcohol dehydrogenasePopulus tremuloides 3.90.180.10 202 21 80 2.93 3.65
1n9gA01 78.90 Candida tropicalisEnoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 2, mitochondrial 3.90.180.10 207 15 75 3.43 4.57
1wlyA01 78.78 2-haloacrylate reductaseBurkholderia sp. WS 3.90.180.10 175 16 73 2.85 3.88
1yb5A01 77.86 Xenobiotic catabolic processNADPH bindingNADPH2:quinone reductase [EC:1.6.5.5]Visual perceptionHomo sapiens 3.90.180.10 156 18 64 2.26 3.52
1o89A01 77.56 Putative quinone oxidoreductase yhdHEscherichia coli K-12 3.90.180.10 153 16 65 2.87 4.38
1iz0A01 76.47 NADPH2:quinone reductase [EC:1.6.5.5]Probable quinone oxidoreductaseThermus thermophilus 3.90.180.10 138 21 58 2.25 3.85
1v3vA01 75.50 Cavia porcellusProstaglandin reductase 1 3.90.180.10 155 12 61 2.99 4.89
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Displaying entries 1 to 13 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1kolA01
GNRGVVYLGSGKVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTAQVGLVLGHEITGEVIEKGRDVE
NLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDRDKAMEKI
RDLTCLSDITPVMKYNRALMQAIMWDRINIAEVVGVQVISLDDAPRGYGEFDAGVPKKFVIDPHKTFSA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1kolA01
SGNRGVVYLGSGKVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTAQVGLVLGHEITGEVIEKGRDV
ENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDRDKAMEK
IRDLTCLSDITPVMKYNRALMQAIMWDRINIAEVVGVQVISLDDAPRGYGEFDAGVPKKFVIDPHKTFSAA
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:33

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:33

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:05

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"