CATH Domain: 1knmA00 XML data for domain: 1knmA00

Molscript image for 1knmA00
1knmA00
PDB coordinates for domain 1knmA00

PDB 1knm, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.80 Trefoil
2.80.10 Trefoil (Acidic Fibroblast Growth Factor, subunit A)
2.80.10.50 Gene3D
2.80.10.50.4
2.80.10.50.4.1
2.80.10.50.4.1.1
2.80.10.50.4.1.1.1
2.80.10.50.4.1.1.1.1

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Segment boundaries for domain 1knmA00

Chopping figure for domain 1knmA00
DomainStart PDB ResidueStop PDB Residue
1knmA00 2 130

Structural Neighbourhood (28 entries)

There are 28 matching structural neighberhood comparisons for CATH ID 2.80.10.50.4.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 28 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3c9zA01 92.77 Sambucus nigraNigrin b 2.80.10.50 130 34 95 1.42 1.49
3c9zA02 91.51 Sambucus nigraNigrin b 2.80.10.50 125 24 93 1.56 1.66
1m2tB02 89.99 Beta-galactoside-specific lectin 1Viscum album 2.80.10.50 124 22 92 1.74 1.89
1vclA02 89.39 Cucumaria echinataHemolytic lectin CEL-III 2.80.10.50 134 23 93 2.60 2.79
1ybiA02 87.44 HA-33Clostridium botulinum 2.80.10.50 141 21 86 1.90 2.20
1vclA01 87.23 Cucumaria echinataHemolytic lectin CEL-III 2.80.10.50 149 24 83 2.09 2.51
1dqgA00 86.20 Mus musculusMacrophage mannose receptor 1Mannose bindingCell surfaceTransmembrane receptor activity 2.80.10.50 134 19 88 2.31 2.60
1upsA02 84.17 Clostridium perfringensGlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase 2.80.10.50 133 10 88 2.36 2.66
1n4kA01 82.88 MicrosomeVoluntary musculoskeletal movementNucleolusPhosphoinositide bindingSarcoplasmic reticulum 2.80.10.50 141 6 87 3.28 3.76
1dfcA03 82.57 FascinActin cytoskeletonActin filament bundle assemblyHomo sapiensCell proliferation 2.80.10.50 123 9 89 2.47 2.77
1dfcA02 82.55 FascinActin cytoskeletonActin filament bundle assemblyHomo sapiensCell proliferation 2.80.10.50 123 8 86 2.51 2.92
1jlxA02 82.19 Amaranthus caudatusAgglutinin 2.80.10.50 140 10 87 3.94 4.48
1w3fA01 81.74 Laetiporus sulphureusHemolytic lectin LSLa 2.80.10.50 147 12 82 3.24 3.90
1dfcA01 81.51 FascinActin cytoskeletonActin filament bundle assemblyHomo sapiensCell proliferation 2.80.10.50 122 6 82 1.82 2.19
1sr4A00 81.26 Haemophilus ducreyiCytolethal distending toxin subunit ACytolethal distending toxin subunit A 2.80.10.50 167 17 73 2.62 3.59
1l2hA00 80.84 Prion diseasesPositive regulation of nitric oxide biosynthetic processType I diabetes mellitusPositive regulation of T cell proliferationAlzheimer's disease 2.80.10.50 144 9 79 3.02 3.78
1q1uA00 80.68 Pathways in cancerMAPK signaling pathwayMelanomaRegulation of actin cytoskeletonFibroblast growth factor 12 2.80.10.50 138 3 82 2.55 3.09
2fdbN00 80.42 Type 2 fibroblast growth factor receptor bindingMesonephros developmentPositive regulation of cell proliferationType 1 fibroblast growth factor receptor bindingExtracellular space 2.80.10.50 148 6 78 2.60 3.32
1dfcA04 80.32 FascinActin cytoskeletonActin filament bundle assemblyHomo sapiensCell proliferation 2.80.10.50 107 7 77 2.20 2.84
1wd3A02 80.26 Alpha-L-arabinofuranosidase BAspergillus awamori 2.80.10.50 162 5 69 2.50 3.58
2vxtI00 80.19 Cytokine activityInterleukin 18Signal transducer activityInterleukin-18Interferon-gamma biosynthetic process 2.80.10.50 156 8 75 3.06 4.08
1pwaA00 80.18 Negative regulation of bile acid biosynthetic processNervous system developmentPositive regulation of glucose importPathways in cancerPositive regulation of cell proliferation 2.80.10.50 123 6 79 2.58 3.26
1t9fA00 79.89 Caenorhabditis elegansPutative uncharacterized protein 2.80.10.50 178 10 71 3.46 4.81
1md6A00 79.29 Mus musculusInterleukin-1 family member 5Interleukin 1 family, member 5 (delta) 2.80.10.50 154 10 76 3.24 4.23
1ihkA00 78.62 Pathways in cancerMelanomaMAPK signaling pathwayRegulation of actin cytoskeletonGlia-activating factor 2.80.10.50 157 6 73 2.16 2.95
1sr4C00 78.29 Cytolethal distending toxin protein CCytolethal distending toxin subunit CHaemophilus ducreyi 2.80.10.50 154 13 69 3.34 4.81
1hcdA00 78.21 Membrane fractionPlasma membraneActin filament bindingHisactophilin-1Cytosol 2.80.10.50 118 12 85 3.20 3.75
3iagC02 74.94 Transcription factor bindingHeart developmentRegulation of timing of cell differentiationDefense response to bacteriumNotch signaling pathway 2.80.10.50 155 7 60 2.70 4.50
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Displaying entries 1 to 28 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1knmA00
PPADGGQIKGVGSGRCLDVPDASTSDGTQLQLWDCHSGTNQQWAATDAGELRVYGDKCLDAAGTSNGSKVQIYSCWGGDN
QKWRLNSDGSVVGVQSGLCLDAVGNGTANGTLIQLYTCSNGSNQRWTRT
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1knmA00
EPPADGGQIKGVGSGRCLDVPDASTSDGTQLQLWDCHSGTNQQWAATDAGELRVYGDKCLDAAGTSNGSKVQIYSCWGGD
NQKWRLNSDGSVVGVQSGLCLDAVGNGTANGTLIQLYTCSNGSNQRWTRT
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:48

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:48

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:09

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"