CATH Domain: 1kmtA00 XML data for domain: 1kmtA00

Molscript image for 1kmtA00
1kmtA00
PDB coordinates for domain 1kmtA00

PDB 1kmt, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.70 Distorted Sandwich
2.70.50 Coagulation Factor XIII; Chain A, domain 1
2.70.50.30 Coagulation Factor XIII, subunit A, domain 1 Gene3D
2.70.50.30.1
2.70.50.30.1.1
2.70.50.30.1.1.1
2.70.50.30.1.1.1.1
2.70.50.30.1.1.1.1.1

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Segment boundaries for domain 1kmtA00

Chopping figure for domain 1kmtA00
DomainStart PDB ResidueStop PDB Residue
1kmtA00 65 202

Structural Neighbourhood (14 entries)

There are 14 matching structural neighberhood comparisons for CATH ID 2.70.50.30.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 14 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1ds6B00 87.57 Neurotrophin signaling pathwayVasopressin-regulated water reabsorptionCellular component movementRho GDP-dissociation inhibitor 2Cytoskeleton 2.70.50.30 179 74 77 1.50 1.95
1kshB00 80.28 Purine metabolismVisual perceptionRetinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit deltaHomo sapiensRetinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta 2.70.50.40 141 10 89 3.63 4.06
3cmgA02 78.31 Putative beta-galactosidaseBacteroides fragilis NCTC 9343 2.60.40.320 118 11 75 3.51 4.66
1vjjA04 78.25 Calcium ion bindingHair follicle morphogenesisGTP bindingExtrinsic to internal side of plasma membraneTransglutaminase 3 [EC:2.3.2.13] 2.60.40.10 97 9 69 3.32 4.77
1g0dA04 76.67 Protein-glutamine gamma-glutamyltransferase 2Pagrus major 2.60.40.10 97 10 69 3.15 4.53
1kv3A03 76.39 Huntington's diseaseProtein-glutamine gamma-glutamyltransferase 2Homo sapiensTransglutaminase 2 [EC:2.3.2.13] 2.60.40.10 117 5 76 3.60 4.69
1ex0A03 76.33 Protein-glutamine gamma-glutamyltransferase activityHomo sapiensCoagulation factor XIII A chainBlood coagulation 2.60.40.10 114 9 76 3.37 4.39
1ex0A04 76.11 Protein-glutamine gamma-glutamyltransferase activityHomo sapiensCoagulation factor XIII A chainBlood coagulation 2.60.40.10 95 10 68 3.33 4.89
1vjjA03 75.89 Calcium ion bindingHair follicle morphogenesisGTP bindingExtrinsic to internal side of plasma membraneTransglutaminase 3 [EC:2.3.2.13] 2.60.40.10 115 8 76 3.72 4.84
1g0dA03 75.81 Protein-glutamine gamma-glutamyltransferase 2Pagrus major 2.60.40.10 110 6 74 3.69 4.94
3bgaA02 75.46 Galactose metabolismBacteroides thetaiotaomicronBeta-galactosidaseSphingolipid metabolismBeta-galactosidase [EC:3.2.1.23] 2.60.40.320 111 4 69 3.19 4.59
1qr4A01 74.16 TenascinGallus gallus 2.60.40.10 87 6 60 2.93 4.81
1fnhA01 73.35 FibronectinER-Golgi intermediate compartmentPeptide cross-linkingFibrinogen complexSubstrate adhesion-dependent cell spreading 2.60.40.10 90 3 62 2.99 4.80
1fnfA02 72.75 FibronectinPeptide cross-linkingER-Golgi intermediate compartmentFibrinogen complexSubstrate adhesion-dependent cell spreading 2.60.40.10 87 6 61 2.88 4.68
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Displaying entries 1 to 14 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1kmtA00
AMVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY
MVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1kmtA00
GAMVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTD
YMVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDWKD
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:47

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:47

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:09

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"