CATH Domain: 1kmmA01 XML data for domain: 1kmmA01

Molscript image for 1kmmA01
1kmmA01
PDB coordinates for domain 1kmmA01

PDB 1kmm, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.930 BirA Bifunctional Protein; domain 2
3.30.930.10 Bira Bifunctional Protein; Domain 2 Gene3D
3.30.930.10.13
3.30.930.10.13.1
3.30.930.10.13.1.1
3.30.930.10.13.1.1.1
3.30.930.10.13.1.1.1.1

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Segment boundaries for domain 1kmmA01

Chopping figure for domain 1kmmA01
DomainStart PDB ResidueStop PDB Residue
1kmmA01 4 325
1kmmA02 326 422

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 3.30.930.10.13.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1atiB01 79.49 Aminoacyl-tRNA biosynthesisThermus thermophilus HB8Glycyl-tRNA synthetase [EC:6.1.1.14]Glycine-tRNA ligase activityProtein dimerization activity 3.30.930.10 305 12 74 2.93 3.95
2zt5A01 78.53 Glycine-tRNA ligase activitySoluble fractionProtein dimerization activityHomo sapiensGlycyl-tRNA synthetase 3.30.930.10 325 12 69 3.23 4.67
1b7yB05 75.18 Aminoacyl-tRNA biosynthesisPhenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]Phenylalanyl-tRNA synthetase beta chainThermus thermophilus 3.30.930.10 191 17 62 3.13 4.99
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1kmmA01
NIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPE
GTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRALGISEHVTL
ELNSIGSLEARANYRDALVAFLEQHALGDYLDEESREHFAGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGS
QGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPEFKA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1kmmA01
MAKNIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTL
RPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRALGISEH
VTLELNSIGSLEARANYRDALVAFLEQHALGDYLDEESREHFAGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNS
LGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPEFKA
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:08

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:08

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:04

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"