CATH Domain: 1kkhA01 XML data for domain: 1kkhA01

Molscript image for 1kkhA01
1kkhA01
PDB coordinates for domain 1kkhA01

PDB 1kkh, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.230 Ribosomal Protein S5; domain 2
3.30.230.10 Gene3D
3.30.230.10.20
3.30.230.10.20.1
3.30.230.10.20.1.1
3.30.230.10.20.1.1.1
3.30.230.10.20.1.1.1.1

[top]
Segment boundaries for domain 1kkhA01

Chopping figure for domain 1kkhA01
DomainStart PDB ResidueStop PDB Residue
1kkhA01 1 181
1kkhA02 182 312

Structural Neighbourhood (2 entries)

There are 2 matching structural neighberhood comparisons for CATH ID 3.30.230.10.20.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 2 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1kvkA01 83.68 Terpenoid backbone biosynthesisPeroxisomeRattus norvegicusSoluble fractionIsopentenyl diphosphate biosynthetic process, mevalonate pathway 3.30.230.10 230 23 77 3.25 4.18
1pieA01 83.49 Amino sugar and nucleotide sugar metabolismGalactose metabolismMetabolic pathwaysLactococcus lactis subsp. lactisGalactokinase [EC:2.7.1.6] 3.30.230.10 211 19 84 2.78 3.30
[1]
Displaying entries 1 to 2 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1kkhA01
PRGSHMIIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQEDEIILNLNDLNKSLGLNLNEIKNINPNNFGDFKY
CLCAIKNTLDYLNIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLGYMVEKEIQGKASITD
TSTITYKGILEIKNNKFRKIK
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1kkhA01
PRGSHMIIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQEDEIILNLNDLNKSLGLNLNEIKNINPNNFGDFKY
CLCAIKNTLDYLNIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLGYMVEKEIQGKASITD
TSTITYKGILEIKNNKFRKIK
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:02

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:02

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:04

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"