CATH Domain: 1kk1A02 XML data for domain: 1kk1A02

Molscript image for 1kk1A02
1kk1A02
PDB coordinates for domain 1kk1A02

PDB 1kk1, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.30 Elongation Factor Tu (Ef-tu); domain 3
2.40.30.10 Translation factors Gene3D
2.40.30.10.3
2.40.30.10.3.1
2.40.30.10.3.1.1
2.40.30.10.3.1.1.1
2.40.30.10.3.1.1.1.1

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Segment boundaries for domain 1kk1A02

Chopping figure for domain 1kk1A02
DomainStart PDB ResidueStop PDB Residue
1kk1A01 6 203
1kk1A02 204 318
1kk1A03 319 410

Structural Neighbourhood (9 entries)

There are 9 matching structural neighberhood comparisons for CATH ID 2.40.30.10.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 9 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2c78A02 88.01 Thermus thermophilus HB8Elongation factor Tu-AElongation factor EF-Tu [EC:3.6.5.3] 2.40.30.10 92 32 81 1.82 2.22
1r5bA02 86.23 Eukaryotic peptide chain release factor GTP-binding subunitProtein heterodimerization activityTranslation release factor activityPeptide chain release factor eRF subunit 2Schizosaccharomyces pombe 2.40.30.10 89 19 79 1.89 2.38
1g7sA02 85.11 Methanothermobacter thermautotrophicus str. Delta HTranslation initiation factor IF-2 unclassified subunitProbable translation initiation factor IF-2 2.40.30.10 108 18 82 2.25 2.71
1wb1B02 84.20 Methanococcus maripaludisMJ0495-like protein 2.40.30.10 92 26 81 1.87 2.28
2bm0A02 84.18 Elongation factor GElongation factor EF-G [EC:3.6.5.3]Thermus thermophilus 2.40.30.10 103 17 79 2.50 3.15
1aipE02 84.01 Elongation factor Tu-AElongation factor EF-Tu [EC:3.6.5.3]Thermus thermophilus 2.40.30.10 130 28 72 1.75 2.42
1g7sA04 80.90 Methanothermobacter thermautotrophicus str. Delta HTranslation initiation factor IF-2 unclassified subunitProbable translation initiation factor IF-2 2.40.30.10 89 14 80 3.27 4.08
2ck3D01 75.64 ATP catabolic processParkinson's diseaseOxidative phosphorylationAlzheimer's diseaseMetabolic pathways 2.40.10.170 73 12 65 3.12 4.74
1krhA02 75.22 Benzoate 1,2-dioxygenase electron transfer componentAcinetobacter sp. ADP1 2.40.30.10 97 6 74 3.68 4.92
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Displaying entries 1 to 9 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1kk1A02
DPNKPPKMLVLRSFDVNKPGKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYP
GGLVGVGTKLDPYLTKGDLMAGNVVGKPGKL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1kk1A02
DPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVE
EAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKL
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:29

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:29

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:04

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"