CATH Domain: 1kjzA03 XML data for domain: 1kjzA03

Molscript image for 1kjzA03
1kjzA03
PDB coordinates for domain 1kjzA03

PDB 1kjz, Chain A, Domain 3

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.30 Elongation Factor Tu (Ef-tu); domain 3
2.40.30.10 Translation factors Gene3D
2.40.30.10.16
2.40.30.10.16.1
2.40.30.10.16.1.1
2.40.30.10.16.1.1.1
2.40.30.10.16.1.1.1.1

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Segment boundaries for domain 1kjzA03

Chopping figure for domain 1kjzA03
DomainStart PDB ResidueStop PDB Residue
1kjzA01 6 203
1kjzA02 204 318
1kjzA03 319 410

Structural Neighbourhood (9 entries)

There are 9 matching structural neighberhood comparisons for CATH ID 2.40.30.10.16.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 9 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2hmaA03 81.07 TRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [EC:2.1.1.61]TRNA-specific 2-thiouridylase mnmAStreptococcus pneumoniae 2.40.30.10 89 19 80 2.53 3.15
1wb1B03 80.65 Methanococcus maripaludisMJ0495-like protein 2.40.30.10 112 26 73 2.49 3.40
1i8dA01 80.25 Riboflavin metabolismMetabolic pathwaysRiboflavin synthase activityRiboflavin synthase alpha chain [EC:2.5.1.9]Riboflavin synthase alpha chain 2.40.30.20 89 11 70 3.53 5.00
2ck3D01 79.56 ATP catabolic processParkinson's diseaseOxidative phosphorylationAlzheimer's diseaseMetabolic pathways 2.40.10.170 73 4 70 3.47 4.91
1v5vA03 79.40 Pyrococcus horikoshiiProbable aminomethyltransferase 2.40.30.110 75 8 75 3.01 4.01
1pj5A05 78.57 N,N-dimethylglycine oxidaseArthrobacter globiformis 2.40.30.110 78 10 78 3.35 4.28
2wssA01 78.30 F-type H+-transporting ATPase subunit alpha [EC:3.6.3.14]Huntington's diseaseParkinson's diseaseOxidative phosphorylationBos taurus 2.40.30.20 93 7 64 2.90 4.50
1wb1B02 76.54 Methanococcus maripaludisMJ0495-like protein 2.40.30.10 92 5 70 3.52 4.98
1lvoA02 75.49 Replicase polyprotein 1abPorcine transmissible gastroenteritis coronavirus strain Purdue 2.40.10.10 88 6 69 3.43 4.93
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Displaying entries 1 to 9 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1kjzA03
PPVWDSLRLEVHLLERVVGTEQELKVEPIKRKEVLLLNVGTARTMGLVTGLGKDEIEVKLQIPVCAEPGDRVAISRQIGS
RWRLIGYGIIKE
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1kjzA03
PPVWDSLRLEVHLLERVVGTEQELKVEPIKRKEVLLLNVGTARTMGLVTGLGKDEIEVKLQIPVCAEPGDRVAISRQIGS
RWRLIGYGIIKE
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:29

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:29

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:04

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"