CATH Domain: 1kdjA00 XML data for domain: 1kdjA00

Molscript image for 1kdjA00
1kdjA00
PDB coordinates for domain 1kdjA00

PDB 1kdj, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.40 Immunoglobulin-like
2.60.40.420 Cupredoxins - blue copper proteins Gene3D
2.60.40.420.33
2.60.40.420.33.1
2.60.40.420.33.1.1
2.60.40.420.33.1.1.1
2.60.40.420.33.1.1.1.1

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Segment boundaries for domain 1kdjA00

Chopping figure for domain 1kdjA00
DomainStart PDB ResidueStop PDB Residue
1kdjA00 1 102

Structural Neighbourhood (1 entries)

There are 1 matching structural neighberhood comparisons for CATH ID 2.60.40.420.33.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 1 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1sddB02 76.59 Coagulation factor VBos taurusCoagulation factor V (labile factor)Complement and coagulation cascades 2.60.40.420 125 10 72 3.33 4.57
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Displaying entries 1 to 1 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1kdjA00
AKVEVGDEVGNFKFYPDSITVSAGEAVEFTLVGETGHNIVFDIPAGAPGTVASELKAASMDENDLLSEDEPSFKAKVSTP
GTYTFYCTPHKSANMKGTLTVK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1kdjA00
AKVEVGDEVGNFKFYPDSITVSAGEAVEFTLVGETGHNIVFDIPAGAPGTVASELKAASMDENDLLSEDEPSFKAKVSTP
GTYTFYCTPHKSANMKGTLTVK
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1kdj000" to "1kdjA00" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 18:43

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:43

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:02

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"