CATH Domain: 1kbvA02 XML data for domain: 1kbvA02

Molscript image for 1kbvA02
1kbvA02
PDB coordinates for domain 1kbvA02

PDB 1kbv, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.40 Immunoglobulin-like
2.60.40.420 Cupredoxins - blue copper proteins Gene3D
2.60.40.420.19
2.60.40.420.19.1
2.60.40.420.19.1.1
2.60.40.420.19.1.1.1
2.60.40.420.19.1.1.1.1

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Segment boundaries for domain 1kbvA02

Chopping figure for domain 1kbvA02
DomainStart PDB ResidueStop PDB Residue
1kbvA01 13 156
1kbvA02 161 314

Structural Neighbourhood (4 entries)

There are 4 matching structural neighberhood comparisons for CATH ID 2.60.40.420.19.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 4 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1sddB02 81.65 Coagulation factor VBos taurusCoagulation factor V (labile factor)Complement and coagulation cascades 2.60.40.420 125 17 80 3.81 4.73
1ibyA00 81.17 Chain A, Red Copper Protein NitrosocyaninNitrosomonas europaea 2.60.40.420 112 18 64 2.05 3.19
1gskA01 77.55 Spore coat protein ABacillus subtilisSpore coat protein A 2.60.40.420 167 9 70 3.38 4.78
1sddA02 75.15 Coagulation factor VBos taurusCoagulation factor V (labile factor)Complement and coagulation cascades 2.60.40.420 101 11 61 2.65 4.30
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Displaying entries 1 to 4 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1kbvA02
PKVDKEFYIVQGDFYTKGKKGAQGLQPFDMDKAVAEQPEYVVFNGHVGALTGDNALKAKAGETVRMYVGNGGPNLVSSFH
VIGEIFDKVYVEGGKLINENVQSTIVPAGGSAIVEFKVDIPGNYTLVDHSIFRAFNKGALGQLKVEGAENPEIM
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1kbvA02
PKVDKEFYIVQGDFYTKGKKGAQGLQPFDMDKAVAEQPEYVVFNGHVGALTGDNALKAKAGETVRMYVGNGGPNLVSSFH
VIGEIFDKVYVEGGKLINENVQSTIVPAGGSAIVEFKVDIPGNYTLVDHSIFRAFNKGALGQLKVEGAENPEIMTQKLSD
TAYAVPR
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:43

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:43

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:02

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"