CATH Domain: 1kbvA01 XML data for domain: 1kbvA01

Molscript image for 1kbvA01
1kbvA01
PDB coordinates for domain 1kbvA01

PDB 1kbv, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.40 Immunoglobulin-like
2.60.40.420 Cupredoxins - blue copper proteins Gene3D
2.60.40.420.15
2.60.40.420.15.1
2.60.40.420.15.1.1
2.60.40.420.15.1.1.1
2.60.40.420.15.1.1.1.1

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Segment boundaries for domain 1kbvA01

Chopping figure for domain 1kbvA01
DomainStart PDB ResidueStop PDB Residue
1kbvA01 13 156
1kbvA02 161 314

Structural Neighbourhood (5 entries)

There are 5 matching structural neighberhood comparisons for CATH ID 2.60.40.420.15.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 5 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1aozA01 85.33 L-ascorbate oxidaseCucurbita pepo var. melopepo 2.60.40.420 130 23 80 2.60 3.23
1sddB01 83.19 Coagulation factor VBos taurusCoagulation factor V (labile factor)Complement and coagulation cascades 2.60.40.420 156 15 71 1.96 2.73
1ibyA00 82.72 Chain A, Red Copper Protein NitrosocyaninNitrosomonas europaea 2.60.40.420 112 16 71 2.34 3.27
1sddB02 82.53 Coagulation factor VBos taurusCoagulation factor V (labile factor)Complement and coagulation cascades 2.60.40.420 125 20 78 3.64 4.64
1kbvA02 82.13 Neisseria gonorrhoeaeCopper-containing nitrite reductase 2.60.40.420 154 13 74 2.60 3.48
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Displaying entries 1 to 5 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1kbvA01
ELPVIDAVTTHAPEVPPAIDRDYPAKVRVKMETVEKTMKMDDGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNNPSSTV
PHNVDFHAATGQGGGAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYGLILVEP
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1kbvA01
MAAQATAETPAGELPVIDAVTTHAPEVPPAIDRDYPAKVRVKMETVEKTMKMDDGVEYRYWTFDGDVPGRMIRVREGDTV
EVEFSNNPSSTVPHNVDFHAATGQGGGAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYGLILVEP
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:43

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:43

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:02

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"