CATH Domain: 1k92A01 XML data for domain: 1k92A01

Molscript image for 1k92A01
1k92A01
PDB coordinates for domain 1k92A01

PDB 1k92, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.620 Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1 Gene3D
3.40.50.620.17
3.40.50.620.17.1
3.40.50.620.17.1.1
3.40.50.620.17.1.1.1
3.40.50.620.17.1.1.1.1

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Segment boundaries for domain 1k92A01

Chopping figure for domain 1k92A01
DomainStart PDB ResidueStop PDB Residue
1k92A01 1 72
1k92A01 101 188
1k92A02 73 100
1k92A02 189 375
1k92A03 376 439

Structural Neighbourhood (5 entries)

There are 5 matching structural neighberhood comparisons for CATH ID 3.40.50.620.17.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 5 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1korB01 86.51 Thermus thermophilus HB8Arginine and proline metabolismArgininosuccinate synthase [EC:6.3.4.5]Alanine, aspartate and glutamate metabolismArgininosuccinate synthase 3.40.50.620 166 28 84 2.06 2.44
1kh1C01 86.51 Thermus thermophilus HB8Arginine and proline metabolismArgininosuccinate synthase [EC:6.3.4.5]Alanine, aspartate and glutamate metabolismArgininosuccinate synthase 3.40.50.620 136 31 84 1.93 2.29
3h7eA01 78.21 Pyrococcus furiosusN-type ATP pyrophosphatase superfamily 3.40.50.620 133 13 80 3.88 4.81
3glvA00 75.05 Thermoplasma volcanium GSS1Lipopolysaccharide core biosynthesis proteinGlycerophospholipid metabolismGlycerol-3-phosphate cytidylyltransferase [EC:2.7.7.39] 3.40.50.620 122 12 70 3.10 4.43
1qtqA05 72.26 Aminoacyl-tRNA biosynthesisMetabolic pathwaysGlutaminyl-tRNA synthetaseGlutamine-tRNA ligase activityGlutaminyl-tRNA aminoacylation 3.40.50.620 123 5 63 3.13 4.91
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Displaying entries 1 to 5 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1k92A01
TTILKHLPVGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEEDYDAIPRRAMEYGAENARLIDCTTPLGRAV
TGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTNAELQIYKPWLDTDFIDELGGRHEMSEFMIACGFDYKMSVEK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1k92A01
TTILKHLPVGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEEDYDAIPRRAMEYGAENARLIDCTTPLGRAV
TGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTNAELQIYKPWLDTDFIDELGGRHEMSEFMIACGFDYKMSVEK
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:15

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:15

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:02

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"