CATH Domain: 1k8uA00 XML data for domain: 1k8uA00

Molscript image for 1k8uA00
1k8uA00
PDB coordinates for domain 1k8uA00

PDB 1k8u, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.238 Recoverin; domain 1
1.10.238.10 EF-hand Gene3D
1.10.238.10.2
1.10.238.10.2.1
1.10.238.10.2.1.1
1.10.238.10.2.1.1.1
1.10.238.10.2.1.1.1.1

[top]
Segment boundaries for domain 1k8uA00

Chopping figure for domain 1k8uA00
DomainStart PDB ResidueStop PDB Residue
1k8uA00 2 90

Structural Neighbourhood (10 entries)

There are 10 matching structural neighberhood comparisons for CATH ID 1.10.238.10.2.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 10 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2wcbA00 87.47 Calcium ion bindingZinc ion bindingPlasma membraneNucleusRAGE receptor binding 1.10.238.10 92 33 94 2.80 2.96
3cztX00 85.39 S100 beta bindingRuffleProtein homodimerization activityNucleusRAGE receptor binding 1.10.238.10 87 33 88 3.42 3.86
3c1vA00 84.93 Calcium ion bindingNucleusRAGE receptor bindingEpithelial to mesenchymal transitionPositive regulation of I-kappaB kinase/NF-kappaB cascade 1.10.238.10 87 39 94 4.71 5.00
1xk4E00 84.14 Protein S100-A8Calcium ion bindingHomo sapiensInflammatory responseProtein binding 1.10.238.10 89 20 88 3.16 3.56
1a4pA00 83.71 Protein S100-A10Homo sapiens 1.10.238.10 92 20 86 3.34 3.84
1qx2A00 83.13 Protein S100-GBos taurus 1.10.238.10 75 21 78 3.17 4.06
1wdcC01 82.89 Myosin essential light chain, striated adductor muscleArgopecten irradians 1.10.238.10 78 11 88 3.34 3.77
1ncxA01 82.33 Gallus gallusTroponin C, skeletal muscle 1.10.238.10 90 11 81 3.66 4.51
2bl0B01 81.27 Physarum polycephalumMyosin regulatory light chain 1.10.238.10 68 11 77 3.39 4.40
1k90E01 78.35 Phosphatidylinositol signaling systemCalcium signaling pathwayOocyte meiosisMelanogenesisInsulin signaling pathway 1.10.238.10 74 13 79 3.77 4.75
[1]
Displaying entries 1 to 10 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1k8uA00
APLDQAIGLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLEDLDRNKDQEVNFQEYVTFLGALALI
YNEALKG
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1k8uA00
MAXPLDQAIGLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLXEDLDRNKDQEVNFQEYVTFLGAL
ALIYNEALKG
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:06

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:06

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:25

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"