CATH Domain: 1k8kC00 XML data for domain: 1k8kC00

Molscript image for 1k8kC00
1k8kC00
PDB coordinates for domain 1k8kC00

PDB 1k8k, Chain C, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.130 7 Propellor
2.130.10 Methylamine Dehydrogenase; Chain H
2.130.10.10 YVTN repeat-like/Quinoprotein amine dehydrogenase Gene3D
2.130.10.10.7
2.130.10.10.7.1
2.130.10.10.7.1.1
2.130.10.10.7.1.1.1
2.130.10.10.7.1.1.1.1

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Segment boundaries for domain 1k8kC00

Chopping figure for domain 1k8kC00
DomainStart PDB ResidueStop PDB Residue
1k8kC00 2 372

Structural Neighbourhood (5 entries)

There are 5 matching structural neighberhood comparisons for CATH ID 2.130.10.10.7.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 5 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1nr0A01 81.26 Caenorhabditis elegansOvipositionLocomotionPositive regulation of locomotionNematode larval development 2.130.10.10 298 12 80 2.54 3.15
1p22A02 80.68 Ubiquitin-dependent protein catabolic processF-box/WD repeat-containing protein 1AHomo sapiensProtein bindingSignal transduction 2.130.10.10 295 15 78 2.73 3.46
1l0qA01 77.32 Methanosarcina mazeiORF492 2.130.10.10 295 8 74 3.27 4.42
1ri6A00 77.23 Pentose phosphate pathwayMetabolic pathways6-phosphogluconolactonase [EC:3.1.1.31]6-phosphogluconolactonase activity6-phosphogluconolactonase 2.130.10.10 333 8 79 3.56 4.47
1pguB01 76.15 Mating projection tipResponse to osmotic stressNucleusActin bindingActin filament depolymerization 2.130.10.10 279 11 74 3.09 4.18
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Displaying entries 1 to 5 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1k8kC00
AYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL
KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS
CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA
SETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPTARERFQNLDKKAAGLDSLHKNSVSQISVLSGG
KAKCSQFCTTGMDGGMSIWDVRSLESALKDLKIV
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1k8kC00
MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT
LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG
SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL
ASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAG
LDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALKDLKIV
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:49

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:49

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:11

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"